Detail information of GWHGAAEX004884/evm.TU.scaffold_156.3
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|521459603|ref|YP_008153931.1| | 9.00E-39 | ATP-dependent helicase [Sorangium cellulosum So0157-2] |
| KOG | KOG0920 | 0 | ATP-dependent RNA helicase A |
| nr | gi|672173162|ref|XP_008806702.1| | 0 | PREDICTED: probable ATP-dependent RNA helicase YTHDC2 isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q38953|DHX8_ARATH | 2.00E-45 | Probable pre-mRNA-splicing factor ATP-dependent RNA helicase |
| trEMBL | tr|K3XDX8|K3XDX8_SETIT | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Si000095m} |
| TAIR | AT2G30800 | 0 | helicase in vascular tissue and tapetum |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000160 | 123982 | 217082 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004884
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01424.21 | R3H | 129 | 185 | 1.60E-10 |
| PF00270.28 | DEAD | 294 | 461 | 6.90E-07 |
| PF00271.30 | Helicase_C | 650 | 782 | 2.50E-13 |
| PF04408.22 | HA2 | 848 | 942 | 7.40E-16 |
| PF07717.15 | OB_NTP_bind | 1007 | 1093 | 3.20E-10 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K14442 | DHX36, RHAU | RNA degradation | map03018 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0004386 | Molecular Function | helicase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 17.210 |
| SRR2545915 | Juvenile tuber | 19.150 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 10.710 |
| SRR5643514 | five period of Gastrodia elata | 10.810 | |
| SRR5643515 | five period of Gastrodia elata | 10.840 | |
| SRR5643524 | five period of Gastrodia elata | 11.510 | |
| SRR5643525 | five period of Gastrodia elata | 11.490 | |
| SRR5643528 | five period of Gastrodia elata | 9.590 | |
| SRR5643658 | five period of Gastrodia elata | 9.760 | |
| SRR5643659 | five period of Gastrodia elata | 12.840 | |
| SRR5643660 | five period of Gastrodia elata | 14.560 | |
| SRR5643661 | five period of Gastrodia elata | 12.370 | |
| SRR5643662 | five period of Gastrodia elata | 13.740 | |
| SRR5643663 | five period of Gastrodia elata | 13.390 | |
| SRR5643664 | five period of Gastrodia elata | 13.570 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 12.250 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 13.380 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 12.000 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 14.740 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 12.760 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 15.830 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 15.070 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 13.630 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 11.790 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 13.650 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 12.020 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 12.020 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 19.76 |
| Juven | Juvenile tuber | 23.62 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 20.19 | |
| Mother_Juven | Mother tuber of Juvenile | 29.40 |