Detail information of GWHGAAEX004888/evm.TU.scaffold_156.8


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG31764.00E-47Predicted alpha-helical protein, potentially involved in replication/repair
nrgi|743768620|ref|XP_010914588.1|2.67E-108PREDICTED: DNA replication complex GINS protein SLD5 isoform X2 [Elaeis guineensis]
trEMBLtr|M0T0I5|M0T0I5_MUSAM3.00E-99Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P21600_001}
TAIRAT5G490104.00E-47DNA replication protein-related

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000160373256380556-
Transcript Sequence

Network for GWHGAAEX004888

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module7

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF16922.4SLD5_C1692236.20E-17
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0006261Biological ProcessDNA-dependent DNA replication

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms68.670
SRR2545915Juvenile tuber65.150
SRP108465SRR5643513five period of Gastrodia elata74.900
SRR5643514five period of Gastrodia elata62.840
SRR5643515five period of Gastrodia elata55.470
SRR5643524five period of Gastrodia elata67.870
SRR5643525five period of Gastrodia elata81.330
SRR5643528five period of Gastrodia elata69.820
SRR5643658five period of Gastrodia elata84.290
SRR5643659five period of Gastrodia elata42.930
SRR5643660five period of Gastrodia elata49.710
SRR5643661five period of Gastrodia elata49.090
SRR5643662five period of Gastrodia elata49.200
SRR5643663five period of Gastrodia elata54.250
SRR5643664five period of Gastrodia elata60.000
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_140.980
SRR6049655Rhizomagastrodiae_C368-T10_good_151.860
SRR6049656Rhizomagastrodiae_C368-T07_good_131.090
SRR6049657Rhizomagastrodiae_C368-T07_good_159.070
SRR6049658Rhizomagastrodiae_C368-T04_good_145.520
SRR6049659Rhizomagastrodiae_C368-T04_good_140.220
SRR6049660Rhizomagastrodiae_C368-T01_good_145.490
SRR6049661Rhizomagastrodiae_C368-T04_good_122.490
SRR6049662Rhizomagastrodiae_C368-T01_good_129.600
SRR6049663Rhizomagastrodiae_C368-T01_good_130.430
SRR6049664Rhizomagastrodiae_C368-T10_good_142.150
SRR6049665Rhizomagastrodiae_C368-T10_good_142.150
SRP279888GastroGastrodia elata tuber 85.75
JuvenJuvenile tuber125.71
Mother_GastroMother tuber of Gastrodia elata 93.47
Mother_JuvenMother tuber of Juvenile 164.36