Detail information of GWHGAAEX004890/evm.TU.scaffold_156.11


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|566034906|gb|AHC30880.1|0COBRA-like protein [Oncidium hybrid cultivar]
Swissprottr|Q6Z4G8|COBL1_ORYSJ0COBRA-like protein 1 (Precursor)
trEMBLtr|V9QM13|V9QM13_ONCHC0COBRA-like protein {ECO:0000313|EMBL:AHC30880.1}
TAIRAT3G022100COBRA-like protein 1 precursor

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000160541277549603+
Transcript Sequence

Network for GWHGAAEX004890

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04833.14COBRA632262.00E-73
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0010215Biological Processcellulose microfibril organization
GO:0031225Cellular Componentanchored component of membrane

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms45.270
SRR2545915Juvenile tuber103.190
SRP108465SRR5643513five period of Gastrodia elata122.620
SRR5643514five period of Gastrodia elata130.700
SRR5643515five period of Gastrodia elata138.470
SRR5643524five period of Gastrodia elata140.790
SRR5643525five period of Gastrodia elata84.940
SRR5643528five period of Gastrodia elata82.200
SRR5643658five period of Gastrodia elata121.500
SRR5643659five period of Gastrodia elata115.800
SRR5643660five period of Gastrodia elata105.400
SRR5643661five period of Gastrodia elata122.100
SRR5643662five period of Gastrodia elata70.350
SRR5643663five period of Gastrodia elata100.230
SRR5643664five period of Gastrodia elata54.860
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_188.780
SRR6049655Rhizomagastrodiae_C368-T10_good_1117.040
SRR6049656Rhizomagastrodiae_C368-T07_good_1103.940
SRR6049657Rhizomagastrodiae_C368-T07_good_178.830
SRR6049658Rhizomagastrodiae_C368-T04_good_139.900
SRR6049659Rhizomagastrodiae_C368-T04_good_135.620
SRR6049660Rhizomagastrodiae_C368-T01_good_174.440
SRR6049661Rhizomagastrodiae_C368-T04_good_161.810
SRR6049662Rhizomagastrodiae_C368-T01_good_191.180
SRR6049663Rhizomagastrodiae_C368-T01_good_173.990
SRR6049664Rhizomagastrodiae_C368-T10_good_1112.590
SRR6049665Rhizomagastrodiae_C368-T10_good_1112.590
SRP279888GastroGastrodia elata tuber 60.89
JuvenJuvenile tuber87.54
Mother_GastroMother tuber of Gastrodia elata 23.95
Mother_JuvenMother tuber of Juvenile 27.23