Detail information of GWHGAAEX004896/evm.TU.scaffold_156.18


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG28323.00E-130TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation)
nrgi|743762323|ref|XP_010907569.1|0PREDICTED: mitochondrial import inner membrane translocase subunit TIM50 [Elaeis guineensis]
Swissprottr|Q8VYE2|TIM50_ARATH1.00E-135Mitochondrial import inner membrane translocase subunit TIM50 (Precursor)
trEMBLtr|M0U3S1|M0U3S1_MUSAM2.00E-178Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P26640_001}
TAIRAT1G559003.00E-130Haloacid dehalogenase-like hydrolase (HAD) superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000160753436798129+
Transcript Sequence

Network for GWHGAAEX004896

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03031.17NIF1763221.60E-37
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms19.500
SRR2545915Juvenile tuber17.980
SRP108465SRR5643513five period of Gastrodia elata11.560
SRR5643514five period of Gastrodia elata13.970
SRR5643515five period of Gastrodia elata10.720
SRR5643524five period of Gastrodia elata11.610
SRR5643525five period of Gastrodia elata9.230
SRR5643528five period of Gastrodia elata9.020
SRR5643658five period of Gastrodia elata8.620
SRR5643659five period of Gastrodia elata11.860
SRR5643660five period of Gastrodia elata13.740
SRR5643661five period of Gastrodia elata12.800
SRR5643662five period of Gastrodia elata14.210
SRR5643663five period of Gastrodia elata13.670
SRR5643664five period of Gastrodia elata14.510
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_114.840
SRR6049655Rhizomagastrodiae_C368-T10_good_123.180
SRR6049656Rhizomagastrodiae_C368-T07_good_116.350
SRR6049657Rhizomagastrodiae_C368-T07_good_117.860
SRR6049658Rhizomagastrodiae_C368-T04_good_120.660
SRR6049659Rhizomagastrodiae_C368-T04_good_117.900
SRR6049660Rhizomagastrodiae_C368-T01_good_122.970
SRR6049661Rhizomagastrodiae_C368-T04_good_116.700
SRR6049662Rhizomagastrodiae_C368-T01_good_119.670
SRR6049663Rhizomagastrodiae_C368-T01_good_126.370
SRR6049664Rhizomagastrodiae_C368-T10_good_119.820
SRR6049665Rhizomagastrodiae_C368-T10_good_119.820
SRP279888GastroGastrodia elata tuber 15.95
JuvenJuvenile tuber14.60
Mother_GastroMother tuber of Gastrodia elata 7.00
Mother_JuvenMother tuber of Juvenile 9.57