Detail information of GWHGAAEX004903/evm.TU.scaffold_156.29


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|320160654|ref|YP_004173878.1|0argininosuccinate synthase [Anaerolinea thermophila UNI-1]
KOGKOG17060Argininosuccinate synthase
nrgi|695007222|ref|XP_009390151.1|0PREDICTED: argininosuccinate synthase, chloroplastic [Musa acuminata subsp. malaccensis]
Swissprottr|Q9SZX3|ASSY_ARATH0Argininosuccinate synthase, chloroplastic (Precursor)
trEMBLtr|A0A061FYU3|A0A061FYU3_THECC0Arginosuccinate synthase family isoform 1 {ECO:0000313|EMBL:EOY22446.1}
TAIRAT4G248300arginosuccinate synthase family

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000160963093973237-
Transcript Sequence

Network for GWHGAAEX004903

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00764.18Arginosuc_synth284148.10E-160
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01940argG, ASS1 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Biosynthesis of antibioticsmap01130
Biosynthesis of amino acidsmap01230
Pyrimidine metabolismmap00240
Arginine biosynthesismap00220

Gene Ontology

GO term OntologyName
GO:0006526Biological Processarginine biosynthetic process
GO:0004055Molecular Functionargininosuccinate synthase activity
GO:0005524Molecular FunctionATP binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms115.630
SRR2545915Juvenile tuber125.700
SRP108465SRR5643513five period of Gastrodia elata92.710
SRR5643514five period of Gastrodia elata93.310
SRR5643515five period of Gastrodia elata80.830
SRR5643524five period of Gastrodia elata77.180
SRR5643525five period of Gastrodia elata49.850
SRR5643528five period of Gastrodia elata54.780
SRR5643658five period of Gastrodia elata44.830
SRR5643659five period of Gastrodia elata155.990
SRR5643660five period of Gastrodia elata154.630
SRR5643661five period of Gastrodia elata163.970
SRR5643662five period of Gastrodia elata128.880
SRR5643663five period of Gastrodia elata138.220
SRR5643664five period of Gastrodia elata132.330
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1142.780
SRR6049655Rhizomagastrodiae_C368-T10_good_1154.670
SRR6049656Rhizomagastrodiae_C368-T07_good_1147.640
SRR6049657Rhizomagastrodiae_C368-T07_good_1125.850
SRR6049658Rhizomagastrodiae_C368-T04_good_1104.340
SRR6049659Rhizomagastrodiae_C368-T04_good_194.170
SRR6049660Rhizomagastrodiae_C368-T01_good_1143.130
SRR6049661Rhizomagastrodiae_C368-T04_good_1139.430
SRR6049662Rhizomagastrodiae_C368-T01_good_1202.630
SRR6049663Rhizomagastrodiae_C368-T01_good_1154.260
SRR6049664Rhizomagastrodiae_C368-T10_good_1167.800
SRR6049665Rhizomagastrodiae_C368-T10_good_1167.800
SRP279888GastroGastrodia elata tuber 112.66
JuvenJuvenile tuber132.18
Mother_GastroMother tuber of Gastrodia elata 45.91
Mother_JuvenMother tuber of Juvenile 50.48