Detail information of GWHGAAEX004904/evm.TU.scaffold_156.30


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|14520684|ref|NP_126159.1|5.00E-70tRNA-modifying enzyme [Pyrococcus abyssi GE5]
KOGKOG11600Fe-S oxidoreductase
nrgi|743761574|ref|XP_010942945.1|0PREDICTED: S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase [Elaeis guineensis]
Swissprottr|Q8RXN5|TYW1_ARATH0S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase
trEMBLtr|A0A0A0LPA4|A0A0A0LPA4_CUCSA0Uncharacterized protein {ECO:0000313|EMBL:KGN62597.1}
TAIRAT1G752000flavodoxin family protein / radical SAM domain-containing protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000001609876561022110-
Transcript Sequence

Network for GWHGAAEX004904

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00258.24Flavodoxin_1642054.60E-30
PF04055.20Radical_SAM3365162.20E-25
PF08608.11Wyosine_form5195825.40E-26
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0008033Biological ProcesstRNA processing
GO:0055114Biological Processoxidation-reduction process
GO:0003824Molecular Functioncatalytic activity
GO:0051539Molecular Function4 iron, 4 sulfur cluster binding
GO:0010181Molecular FunctionFMN binding
GO:0051536Molecular Functioniron-sulfur cluster binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms28.170
SRR2545915Juvenile tuber24.680
SRP108465SRR5643513five period of Gastrodia elata18.630
SRR5643514five period of Gastrodia elata18.250
SRR5643515five period of Gastrodia elata20.400
SRR5643524five period of Gastrodia elata19.130
SRR5643525five period of Gastrodia elata14.900
SRR5643528five period of Gastrodia elata14.850
SRR5643658five period of Gastrodia elata13.300
SRR5643659five period of Gastrodia elata24.130
SRR5643660five period of Gastrodia elata25.620
SRR5643661five period of Gastrodia elata25.150
SRR5643662five period of Gastrodia elata22.870
SRR5643663five period of Gastrodia elata24.010
SRR5643664five period of Gastrodia elata21.830
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_117.950
SRR6049655Rhizomagastrodiae_C368-T10_good_117.130
SRR6049656Rhizomagastrodiae_C368-T07_good_113.510
SRR6049657Rhizomagastrodiae_C368-T07_good_117.130
SRR6049658Rhizomagastrodiae_C368-T04_good_114.840
SRR6049659Rhizomagastrodiae_C368-T04_good_115.110
SRR6049660Rhizomagastrodiae_C368-T01_good_115.270
SRR6049661Rhizomagastrodiae_C368-T04_good_113.900
SRR6049662Rhizomagastrodiae_C368-T01_good_112.220
SRR6049663Rhizomagastrodiae_C368-T01_good_112.430
SRR6049664Rhizomagastrodiae_C368-T10_good_114.660
SRR6049665Rhizomagastrodiae_C368-T10_good_114.660
SRP279888GastroGastrodia elata tuber 26.99
JuvenJuvenile tuber49.16
Mother_GastroMother tuber of Gastrodia elata 24.82
Mother_JuvenMother tuber of Juvenile 38.63