Gene detail

Detail information of GWHGAAEX004909/evm.TU.scaffold_156.35

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|197287212\|ref\|YP_002153084.1\|	5.00E-110	malate dehydrogenase [Proteus mirabilis HI4320]
KOG	KOG1494	0	NAD-dependent malate dehydrogenase
nr	gi\|743836894\|ref\|XP_010936239.1\|	0	PREDICTED: malate dehydrogenase, glyoxysomal isoform X2 [Elaeis guineensis]
Swissprot	tr\|P19446\|MDHG_CITLA	0	Malate dehydrogenase, glyoxysomal (Precursor)
trEMBL	tr\|A5BEJ8\|A5BEJ8_VITVI	0	Malate dehydrogenase {ECO:0000256\|RuleBase:RU003405}
TAIR	AT2G22780	0	peroxisomal NAD-malate dehydrogenase 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000160	1117983	1135772	-

Transcript Sequence
>GWHTAAEX004909 TATTTTTTTTATTACTGAAATATCTCTTTCTTGCAGCATCACTTATCATCACATCATCTACTACGTTTTCTCTGCTCTCCGGAGAAAAAAGCCCTAAATTTTAACATAGCATCGAATAATACTTTGCATTTTGAAGAAAAATGATGCACAACTACGAGGCCTCCCAGCGCATGGCGAGAATCGCTGCCCATCTCAATCCTACCACATCACAGATGGAGGAAGTCGCTATACTAGGTGACTTGAAGTGCCGCTCCAAGGGAGGTTCCTCAGGGTTTAAAGTGGCAATATTGGGTGCTGCAGGAGGCATAGGACAGCCTCTTTCTATGCTGTTGAAGTTGAACCCGCTTATATCTGTTCTGCATCTTTATGATGTTGTCAACACTCCCGGTGTCACTGCTGATATAAGTCATATGAACACTAGTGCTGTGGTACGAGGATTCTTGGGTCAACAGCAATTGGAGAGTGCACTTAGTGGAATGGATCTTGTTGTCATTCCTGCTGGTGTCCCAAGGAAGCCTGGAATGACTAGGGATGATTTATTTAATATCAATGCTGGTATTGTTCAAACACTCTGTGAAGGAGTTGCTAAGTGTTGCCCACATGCTATTGTGAACTTGATCAGCAATCCTGTGAACTCAACTGTCCCGATTGCGGCTGAGGTCTTTAAGAAAGCGGGCACATACAATCCCAAGCGTCTATTGGGAGTGACTACATTGGATATAGTTAGAGCCAATACCTTTGTGGCTGAAGTTTTGGGAATTGACCCAAGGGAAGTCAATGTTCCTGTTGTTGGATGTCATGCTGGGGTCACCATATTGCCTCTGTTGTCACAGGTTGGGCCTTCCTGTTCTTTAACTGCAGACGAAATAAGGTACCTAACTGACCGTATACAGAATGGAGGGACTGAAGTTGTTGAGGCAAAAGCAGGAGCTGGTTCAGCAACCCTCTCTATGGCATTTGCTGCTGCTAAGTTCACAGATGCATGCTTGAGGGGGCTGCGAGGTGACGCCGATGTAGTAGAATGTTCATTTGTTGATTCTCAGGTGACAGAACTGCCATTTTTTGCATCTAAAGTTAGATTAGGTCGCAATGGAATCGAAGAAATCTACTCTCTTGGACCTCTGAGTGAGTATGAAAGGACTGGGCTAGAAAAAGCAAAGGTAGAGTTGGCGGAAAGCATTCGAAAAGGAATTACTTTCATTAGAAAGTAAGGGGAGATCATTCCTTCAAAGACGGAGTATATCTATGTGTTCATGAGAATGTTCTATATAACTTATAAAATAGCTTAAATTTTTAAGAATATTGTCATTTGCATTTTAAAATTGGGATTATAATTGTTCTTCTGTTCTATTGGAGGAGCTTTTGAATTTCCTTTTAAAACTAATCCTTCTAATTGTACAAAACAATCATGATATTTATAGGCAAATCTTTAATTACAATAATATCACACATTACACAATAAAAACAGAATTCATGCAGTTC

Network for GWHGAAEX004909

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00056.22	Ldh_1_N	46	188	1.50E-46
PF02866.17	Ldh_1_C	190	353	2.50E-48

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00026	MDH2	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Biosynthesis of antibiotics	map01130
		Carbon metabolism	map01200
		Citrate cycle (TCA cycle)	map00020
		Pyruvate metabolism	map00620
		Glyoxylate and dicarboxylate metabolism	map00630
		Carbon fixation in photosynthetic organisms	map00710
		Cysteine and methionine metabolism	map00270

Gene Ontology

GO term	Ontology	Name
GO:0019752	Biological Process	carboxylic acid metabolic process
GO:0005975	Biological Process	carbohydrate metabolic process
GO:0006108	Biological Process	malate metabolic process
GO:0006099	Biological Process	tricarboxylic acid cycle
GO:0055114	Biological Process	oxidation-reduction process
GO:0016491	Molecular Function	oxidoreductase activity
GO:0003824	Molecular Function	catalytic activity
GO:0016615	Molecular Function	malate dehydrogenase activity
GO:0016616	Molecular Function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0030060	Molecular Function	L-malate dehydrogenase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	64.030
SRP064423	SRR2545915	Juvenile tuber	72.460
SRP108465	SRR5643513	five period of Gastrodia elata	77.160
	SRR5643514	five period of Gastrodia elata	89.920
	SRR5643515	five period of Gastrodia elata	83.170
	SRR5643524	five period of Gastrodia elata	88.750
	SRR5643525	five period of Gastrodia elata	97.640
	SRR5643528	five period of Gastrodia elata	122.990
	SRR5643658	five period of Gastrodia elata	113.260
	SRR5643659	five period of Gastrodia elata	73.090
	SRR5643660	five period of Gastrodia elata	71.380
	SRR5643661	five period of Gastrodia elata	74.400
	SRR5643662	five period of Gastrodia elata	70.060
	SRR5643663	five period of Gastrodia elata	72.560
	SRR5643664	five period of Gastrodia elata	72.250
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	70.320
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	78.100
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	72.800
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	67.640
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	65.510
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	72.330
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	73.430
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	65.370
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	78.320
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	73.320
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	85.620
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	85.620
SRP279888	Gastro	Gastrodia elata tuber	115.50
	Juven	Juvenile tuber	127.72
	Mother_Gastro	Mother tuber of Gastrodia elata	87.50
	Mother_Juven	Mother tuber of Juvenile	102.00