Detail information of GWHGAAEX004910/evm.TU.scaffold_156.37
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|186686511|ref|YP_001869707.1| | 7.00E-67 | glycoside hydrolase family protein [Nostoc punctiforme PCC 73102] |
| nr | gi|743761663|ref|XP_010943398.1| | 0 | PREDICTED: uncharacterized protein LOC105061131 [Elaeis guineensis] |
| trEMBL | tr|A0A023JCX7|A0A023JCX7_PHODC | 0 | Xylanase 1 {ECO:0000313|EMBL:AHH32687.1} (Fragment) |
| TAIR | AT1G58370 | 0 | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000160 | 1153436 | 1157676 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004910
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02018.16 | CBM_4_9 | 19 | 151 | 1.00E-19 |
| PF02018.16 | CBM_4_9 | 185 | 328 | 5.30E-19 |
| PF00331.19 | Glyco_hydro_10 | 387 | 645 | 7.30E-41 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0004553 | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0016798 | Molecular Function | hydrolase activity, acting on glycosyl bonds |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.730 |
| SRR2545915 | Juvenile tuber | 2.030 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 4.300 |
| SRR5643514 | five period of Gastrodia elata | 3.230 | |
| SRR5643515 | five period of Gastrodia elata | 3.880 | |
| SRR5643524 | five period of Gastrodia elata | 3.400 | |
| SRR5643525 | five period of Gastrodia elata | 18.480 | |
| SRR5643528 | five period of Gastrodia elata | 11.040 | |
| SRR5643658 | five period of Gastrodia elata | 22.830 | |
| SRR5643659 | five period of Gastrodia elata | 4.430 | |
| SRR5643660 | five period of Gastrodia elata | 2.990 | |
| SRR5643661 | five period of Gastrodia elata | 3.510 | |
| SRR5643662 | five period of Gastrodia elata | 3.100 | |
| SRR5643663 | five period of Gastrodia elata | 2.230 | |
| SRR5643664 | five period of Gastrodia elata | 1.830 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.660 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 6.750 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 6.980 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 4.880 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.580 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.360 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 4.740 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 6.730 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.630 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.810 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.810 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.810 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.65 |
| Juven | Juvenile tuber | 2.83 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 3.72 | |
| Mother_Juven | Mother tuber of Juvenile | 2.38 |