Detail information of GWHGAAEX004917/evm.TU.scaffold_156.49
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1561 | 8.00E-42 | CCAAT-binding factor, subunit B (HAP2) |
| nr | gi|672182108|ref|XP_008811292.1| | 1.02E-90 | PREDICTED: nuclear transcription factor Y subunit A-10-like isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q8LFU0|NFYAA_ARATH | 2.00E-42 | Nuclear transcription factor Y subunit A-10 |
| trEMBL | tr|M0STQ4|M0STQ4_MUSAM | 2.00E-74 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P31420_001} |
| TAIR | AT5G06510 | 8.00E-42 | nuclear factor Y, subunit A10 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000160 | 1550566 | 1563296 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004917
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02045.14 | CBFB_NFYA | 160 | 214 | 5.40E-26 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | NF-YA |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K08064 | NFYA | Antigen processing and presentation | map04612 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 14.660 |
| SRR2545915 | Juvenile tuber | 17.620 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 13.210 |
| SRR5643514 | five period of Gastrodia elata | 22.080 | |
| SRR5643515 | five period of Gastrodia elata | 22.740 | |
| SRR5643524 | five period of Gastrodia elata | 18.850 | |
| SRR5643525 | five period of Gastrodia elata | 5.270 | |
| SRR5643528 | five period of Gastrodia elata | 9.110 | |
| SRR5643658 | five period of Gastrodia elata | 4.400 | |
| SRR5643659 | five period of Gastrodia elata | 37.450 | |
| SRR5643660 | five period of Gastrodia elata | 32.160 | |
| SRR5643661 | five period of Gastrodia elata | 60.180 | |
| SRR5643662 | five period of Gastrodia elata | 47.080 | |
| SRR5643663 | five period of Gastrodia elata | 19.180 | |
| SRR5643664 | five period of Gastrodia elata | 45.190 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 20.910 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 21.530 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 14.950 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 21.040 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 26.680 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 26.840 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 32.530 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 22.250 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 37.920 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 53.080 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 21.520 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 21.520 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 48.16 |
| Juven | Juvenile tuber | 56.02 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 36.74 | |
| Mother_Juven | Mother tuber of Juvenile | 31.56 |