Gene detail

Detail information of GWHGAAEX004920/evm.TU.scaffold_156.53

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|743782241\|ref\|XP_010921093.1\|	PREDICTED: uncharacterized protein LOC105044782 [Elaeis guineensis]
trEMBL	tr\|M0TBK5\|M0TBK5_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P30600_001}
TAIR	AT4G13970	zinc ion binding

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000160	1580057	1590670	-

Transcript Sequence
>GWHTAAEX004920 GCCAAATTAAGGAAAATTTTCAAAAGATCGAAACTTTTTTCTGGATCATAAAGATTTAGTTGCTTTGTATTCTCCCGCCGACTCTCCTGTGCCCAAACCCTAGAAATCCGGACGCAGCATTCTCCGCCTCTTTCTCTCCCGATCTCACCTCTCGCACAGTATCAACGTCTCTCTCGTCTCTTTCTCCATCTACTGTCCTGTACACGAATCACAACCCGAACGCATCATTCTATTTGGGTTCTCCATCGCAGCCAGCTCGACTAAGCCAATCTGTAGGAATTAAGATGGCTAGATGGGATGAAATTTTGACTCTACCGGTGCAGAATCCACCGAACTTAGAATTCTCTGCTGCTGACATTGTGTGGTCCAGAGTGGAAGGTTGGCGAGAAACCATGGACAGGCTTGCCCTTATTCCTTTCTCCAGAGTGAATGATTTTGTCAGAGGTGAATCAAACAACAAGGATTGCCCTACCAGATTTCATGTTGAAGCAAGGAGAAGGCGTCCATCCAAGACTACCAGTAAATTAAAAGTTGATGGAATTCTAGAGTATATTATGTATTGGTGCTCTTTTGGTCCAGATGATCATAGGAAGGGGGGTGCTGTTCGCCCTAGCAGAACTTACTGCACAAAGAGAAAGTCACCTGCTGGTAGGCCAAACACAAAGAGGGGTTGCGTCTGCCATTTCATTGTGAAGCGCTTAATAGCTGAGCAGTCTGTCGCACTTATCATATATAATCAGGACAAACATGTGGACAAGAAAGGGCTGCCCTGCCATGGACTCCAGGATTCAAAAGCTGTGGGAACCTATGCAATGTTTGCCCCTTGCATCTCCGATGAACTCCGTCTTCAAATTACATCTTTGCTTCATGTTGGTGTTCCTGTTGAAACAATCATGCAGAGACACTCAGAAATAGTAGAGAAGCAGGGGGGGCCGAGCAATAGGGATGATCTTCTAACTCAAAGATATGTGCGCAGACTAGAGAGGAAGATTAGGCGCTCAACATATGAATTAAATCCTGATGATGGAATCAGCGTCAACATGTGGATTGAAAAGCACCAGGATATTGTGTTCTTTTATGAGGACTTCTCCTATTCAGAACCTTTCATTTTGGGGATCCAAACCGACTGGCAGCTCCAACAAATGCTCCTGTTTGGCAACCGCAGCATTATTGCCTCCGATTCTAAGTTTGGCTCAAATAAGCTGAAGTATCCTATTCACAGTCTTCTGATCATCGACTCAAAAAAGAACGCAATCCCCGTGGCATGGATTATAACCCCCCGATTTGCCAGTAGAGAAATACATCGGTGGATGCGAGCACTTTATGACAGGATTCGATCCAAAGATCCAACCTGGATGCTAGGCGGTTTTGTTGTTGATGATCCATTAGTTGATGTGAATGTCATCAGAGAGGTTTTTCAATGCTCTGTCTTGGTAAGTTTCTGGCGTGTGCGTCATTCTTGGCATAAAAACCTGGTGAATAGATGCTCGGATACAGGGATGCAACTGGAGGTGTCAAGGCGACTTGGAGGGATAGTCTCCGACATTTGCAAAGGACAGGCCTCCTTGATTTCTTTTGACAATTTCATAGAAGACTTTGTGGATTGCTCAAGTTTTTTGGATTATTTCAAGGCAGTTTGGTTTCCAAAATTGGGAGCCTGGACTAATATCTTAAAGGCCCTTCCGCTTGCTAGTTCTGAGATTTCTTCTGCCATTGAGTGCTACCATAATCAGCTCAAACTTCGGCTGTTAAACGAGATGGATCCAAGTATTTATCAGCGTGCTGATTGGCTAGTCGACAAACTAGGAACTAAAGTGCATTCTTATTACTGGCTGGATGAATACAGCGGCAAGGGCAGCTTTGCCAGATACTGGAAGGATGAGTGGAAATGCGGTTTGACAGCTTGGCGTCAGGCTCTGGAGCTTCATGATTCAGATGTTTTATTTGATGGAGATTCGGCCAGGATTTCTCACTCCGGGCACACGCACGTTGTCCTTAATCCAGGTTCCGACTTTGCTATATGTGATTGTAGTTGGTCTAAGATGGGGAATCTCTGTGAGCATGCGATCAAGTTGGGTCAGATGCATAGGGCCAATAAGCCTAACTCTATGTCAAATGGTATGTTTGAATATGAGAGGATTTTGATGAGTGCTCTTCGATGTCCACCCCACAATTCTCTATTGCGCGACCACGCAATTTGTCTGGCTGTATCTGTTCGGGACCAGCTGAATGCTCTGTTTGGCTCCAATTCTGCTTTTAAAAAAGCTGTAAATGATTCTTATAATTTGACAAACCAATCTTTCGAGAATTTTAGTGCTGCAAATGCTGATAAAAATCCCAAAAATATTGATGCAGATTTGATGCAGCATGCTGAGAAGTCTACTGATTTGTTGACTGCTGCTGACGAACTAATCTCTGTTGGCAAGACTACTGAAAGTGAAATTCTTTTGAGGAAGAGGCCAAGTATTAATTCTTGTGCTGATGAAGTTACTGATGCTGTCCAAAGCAGTGTTGCTGAGAAAATGCAGAGTGGTTATCCAAGTTCAATGTTGGATAATGGTTTTAATGATGTTGATGCCATGAATGATTCCAGTCAAGAGTTTGCTCTTGATGGTGAAGGCATCATTTCTCCTGCAAAAATTTATGAAGAAAATGCCTTTCATATCAGTGACGATGCTGGGCCGAAGAGACAAACATTGCTGTCTGGCCGTTATCAGCACTTTATAGATAGAAAAGCATAAGGGCTGACAGGACAATCTGAAATAAATTTATACTCAAATGGCTTAGGTTTGTGTCCGACTCAAAATAACTTGACACAAATGTGTCAAATCCAAACAGAAACATTTAATAAACAGATCAAAGTTCCAAGCTCGAATCTGACTTGCATCTAACCCAATTGACGCAAAATGACATTTGGATAAGGATACGGAAGCATTATAAAAGCGGTGATCTGTTTTGATGCAAACGTGACTCGATTAAACACTTTAGGGTCAAAACTTGGGATAGATTTGGGTTCTGCAGTCAACTTGAACCCAACCCAAATATTTTATGGGTCTAAAACTTCAATCTAAACTAATTGAATAGTATTGGAGCCGACAATACCAGCCTTTCTGGGGCAAGTTGGAGTTGTATTTTTGTGTCAGCTCACATTTTGATACTGGTAGTCCTGGATTTACAAGGTGAAGAATTAATTGCATGATGCAGATAAAGCATAAGCCTCGAAATTTCTGCCAAGCCAATTTAAGTGGCTTGCATTACAGCTTGACGTCTGCTGGGAGATAAGAGGAATAGAAAGCTTAGGAAAGTAGCAGGGCTTGTATTATAGTTTTAGATTTAGTTCTGCTTCTTTATAATATGGAAACAAGATTCTTATTTAATTGATTCGTGATTCTTATGTGGATAATCCATGCATGTCAATGCTTGCACTTTTCTCATGATCAAGCATTTCTTATAAATGTATAGATTAAATCTTATTTGCATGGAAAAACTGTAATCTTAGAAATGCA

Network for GWHGAAEX004920

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	6.100
SRP064423	SRR2545915	Juvenile tuber	4.480
SRP108465	SRR5643513	five period of Gastrodia elata	5.950
	SRR5643514	five period of Gastrodia elata	4.380
	SRR5643515	five period of Gastrodia elata	5.290
	SRR5643524	five period of Gastrodia elata	4.670
	SRR5643525	five period of Gastrodia elata	6.570
	SRR5643528	five period of Gastrodia elata	5.330
	SRR5643658	five period of Gastrodia elata	7.400
	SRR5643659	five period of Gastrodia elata	6.560
	SRR5643660	five period of Gastrodia elata	6.800
	SRR5643661	five period of Gastrodia elata	4.650
	SRR5643662	five period of Gastrodia elata	7.720
	SRR5643663	five period of Gastrodia elata	6.730
	SRR5643664	five period of Gastrodia elata	5.110
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	4.540
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	4.000
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	5.430
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	5.430
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	4.610
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	5.260
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	6.060
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	4.970
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	4.890
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	5.930
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	5.020
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	5.020
SRP279888	Gastro	Gastrodia elata tuber	4.58
	Juven	Juvenile tuber	3.41
	Mother_Gastro	Mother tuber of Gastrodia elata	5.90
	Mother_Juven	Mother tuber of Juvenile	4.82