Gene detail

Detail information of GWHGAAEX004921/evm.TU.scaffold_156.54

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|427724897\|ref\|YP_007072174.1\|	1.00E-70	polyamine-transporting ATPase [Leptolyngbya sp. PCC 7376]
KOG	KOG0055	2.00E-101	Multidrug/pheromone exporter, ABC superfamily
nr	gi\|694362555\|ref\|XP_009360740.1\|	9.24E-122	PREDICTED: ABC transporter I family member 10, chloroplastic [Pyrus x bretschneideri]
Swissprot	tr\|Q8H1R4\|AB10I_ARATH	2.00E-112	ABC transporter I family member 10, chloroplastic (Precursor)
trEMBL	tr\|M0TI54\|M0TI54_MUSAM	3.00E-120	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr7P16670_001}
TAIR	AT4G33460	2.00E-101	ABC transporter family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000160	1619384	1654749	-

Transcript Sequence
>GWHTAAEX004921 ACCAACAAGCAAATCGATGCCGGCAGGGCTTTTCTACTCACCGGGAAGTGCCGCGGCGCTTGCAGCATCAAGTTGGCGATGCAGGATTGGAGGCAACGGCACTCTTGATTCCACTTCTCCGGCAATATCTATTGAGGCTCGTCGCCTGAGCTTCTCCGTGGCGTCGAAGCGCGGTGGGGTGTTATCTATTCTCATGGACTGTTCAGTTCGCGTTCCCACAGGGCAGCTCTGGATGCTTCTCGGCCCCAACGGTTGCGGCAAATCCACGCTTCTAAAGATCTTAGCAGGGCTTCTTCAGCCAACTGAAGGAACTTCCCATGTGAATAATCCGAAAAGCTTTGTGTTCCAAAATCCAGATCATCAGGTTGTTATGCCCACAGTGGAAGCAGATGTTGCATTTGGCCTTGGTAAATTTGATTTGCCTCTAGATGAAGTTAAATCAAGAGTGTCAAAAGCTTTGGATGCTGTTGGCATGTTGAAGTACTCAAAAAGGCCAATTCAAACTCTCAGTGGCGGTCAGAAGCAAAGAGTGGCTATTGCAGGTGCTCTAGCAGAAGCATGCAAAGTACTATTATTAGACGAGTTGACAACATACTTGGATGACTATGACCAGCTGGGAGTTATAAACGCTGTGAAGAACTGCATATCTGGTAATGAAGATGTTGCTGCATTATGGGTAACACATCGACTGGAAGAACTCAAGCATGCAGACGGTGCATTTTACATGGAAGATGGGCGCATTGTAATGCATGGTAATGTACCTCTTGTCATCAATTTCTTGAAACGCCATCAAGGTCAGTATATTGAACATTTCAATTTATAGAATTTTTCAGTTTAGTTGTAATGATTGTGTTGTAAAGTTTGGGTGTTAAGTATGTGAATATGATATATTTCACTTTTTCTCAAGGCTTAATGACCACAGCATCTTTTCCTGCATAAAATTGACTTTATTGAGAGTATGAGCTTTTTTATGAATGCTTGTAGTGAAATTAAACCTGTTTTCAACTTTTTTGCATGACTAAATGGGATAGAAACCATATAGAATTGCCGAAGTGCAGTGGTTCAATTTGCTGTTACATAATTTACTTGTATTTATTTCTCAAATTCTGCTATTTTACTTCAAATCTACCCAGCAAATACCTCAATCAATATTAGTAGCTTTTTTAAACCCAGTTTTAAATGCAAGATTTGATTATAATAAGCTATCAAATCATATTATTAAACCTCTTTTACTCATAATAAACCTGCCTGAATTGTGTATTGTGTAGCCGGTGGAATAAGATAAGTTTTTTCATGTTTCTCTATGTGTTTTGTAGATCATCAGCCAGCACAGGTCTCAAATCTTATCTCAGTACTTACCACAATCCTAAACCCAAAACCCTAAGCGCATCAACCAAATCATCAATTTACTCTATAAGATGGTCAAGCCCTAGCCTTTAGAACCCCAACTCTGACCTTAAATTTATTGAATGCTGTTATTATCAATTTATGTTTTGTAAATCGGTTAAAGGGATTCAGTAAAAGATATATCTGCTTCACTTGACTGGTGAAAAGCTATCACAAAAGAAAGATAAAAAAGATTGTGAAATTAAAATTTTAAGAATTTTGCAACATTATTTACCTTTTTAATTTGTAGTAGAGATAATCTATTCTGTGAAATTTTTTAATAGGAAACATATTTAAATAGATTGCATTTGATTATTCTTTTTTAGTATAATTAAATAGTGATTTGCAAAAAGGTGAAGGATTTCATAAATCCTAAATTCACAATTTTTGCAGAATAAGGGATTTACGAGGGCTTGGTCGAAAATATAAGATGAAGTTGATTTAATAAATACACACCAAATGATATCTAAGATTATTGACCAATTTCTTTTACTCGTAGTGTAGCCTCTTTAAATCTACTAGTTAACAACTATCAAGAAGTTAATGATTAGCTTGCTTTTTGGGTTCAAGGGTTTTCCTTGGTTTTCAATGTAAGAGATTGTCGGCTAATAAGATAGTGACAGTGTGAGCTTGTCATTTCTTTCACCTCATTACTCCTCTTTAACCTCCATAAGACTTAATAATGTGATTAAAAAGTGTGAAACTTTGTTAGTATTCATAATTAATATTTAGGACGAGGAGCTAGAAGTTCAATTAAATGCCTTGTTCATTGGAAACTAGATGATTGTTACCCTTATGACCATGATAAATTCCGTCAACTCTTTCTCATCGTTTATTTAATCATTTAATTGCTAGATTAATGAGTTAATTATTATTTGAGCATGACTTTTAAAACCCAAGTGGTAGAGTGAAGTTCTCATAGAGCTTTCCTGAACTTTTAGTGTTTACTATGTGCAATTATTTGTTAGAATTTTGAAGCATTTGTTGATCCTTTACCTAAAGTCTCATTTGATTTTCAAGAGAAGATTTAAGTTGAGGGGTCTGTTTGAGAGGCTAGAGACGACCTCTATTTATAGTGGAAGAGAAGTGGATTCAAAGCATGCAACGATCTAAATTCTTAGAAGCTAGGCGTGTCTGGGCGTGTGACTTTAGTCCATGGCCCGCAAGTTACCAATTCCGGCCCACTCAATTGCAGGTATAAACTTGGCTGGACGCATACTTGAGATGCGCGGCACATTACTAAACATTCCAGGCCCACTCAATCACAAGTTTAAAACCCGATTATGCACATCCGGGTGGGGTAATTTGGTGGCATCCAGCCATCCGATGGATCAACCCATTGCAATCACAATGCACCGATTGCAATCACAACTCTCCTGGGTGAATGATTGTGTGTGCTTGAGCGTATCCATAGAAACTAGACTTCATGCTTTCATGATTTAGCTCACTCTAGTGCTTAATATAATCTCAAATTTCAGGAATACGTAGATCTAAGACTAATCCAAAATCTAATATAAACATAATCGTACAAATACGTTTACAAAAAATAAAATCTATGTAAGAAGGTATTCAATTTTCTAGCTATTGCAATCTTCATATTTTTATGCTACTTTATCTTCAACCTTATTGATGCCTCAAGCTGCATCTTTATCAACTATATTCATATAGGCTTGATCGCTTGGTTCATCTAAGATTCGCATTTGCTGAGTATCTAATATTTTTTATTATCAAAATCAGAACATTCACTATTAAATAAGATGTGCTTGTAACTCCTAGAGTCAATAATGATTGGGTTTGAATCTCACGTTGCGATGCTCACTAAGAAATAAATGACAAGTTTTTTGACTTTTTGACATACATTCTTTAGTTTTTAATATATTGCATGCAATATTTTTTAGTTGTTTTTTCAGTCTTTATATTGTACCTAATTAAGGTACTGTCATGATTATTAACCTTTTTTATATGACAAATGATTAAGTAATATAACTCTTAAGTTCTATGTATTCTTATATTGTTGGGAAACTAATTATTTCGTAGGTGCTGAGAAACTTTAGACACAACTCTAAATTTCGTATTTGGGTGAGAGATTATTTTTGTAGCAAGAAGAGAAACTATTTGGAATGATAGTCTTTACATCAATATCTTATATTCATGGATTTTAAATTTTTACTTTTCTTTTATTCTTTTAATGAAACATCAATGCAAAATTTGATTTATATTAATAGTAGTTCTGTGATGTGGTTTGGATATTTATCTTAGATTTTACATTTATATTTGTTTAGTGATTGAGTTTTATCTTTTTTTTTTTTTTTTT

Network for GWHGAAEX004921

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00005.26	ABC_tran	60	191	1.20E-26

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016887	Molecular Function	ATPase activity
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	7.150
SRP064423	SRR2545915	Juvenile tuber	7.040
SRP108465	SRR5643513	five period of Gastrodia elata	5.640
	SRR5643514	five period of Gastrodia elata	7.470
	SRR5643515	five period of Gastrodia elata	5.860
	SRR5643524	five period of Gastrodia elata	7.530
	SRR5643525	five period of Gastrodia elata	4.560
	SRR5643528	five period of Gastrodia elata	4.280
	SRR5643658	five period of Gastrodia elata	6.110
	SRR5643659	five period of Gastrodia elata	6.560
	SRR5643660	five period of Gastrodia elata	6.900
	SRR5643661	five period of Gastrodia elata	5.730
	SRR5643662	five period of Gastrodia elata	6.750
	SRR5643663	five period of Gastrodia elata	6.440
	SRR5643664	five period of Gastrodia elata	7.140
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	8.150
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	4.450
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	7.210
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	7.700
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	9.050
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	9.610
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	7.570
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	7.610
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	6.570
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	7.090
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	6.760
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	6.760
SRP279888	Gastro	Gastrodia elata tuber	12.13
	Juven	Juvenile tuber	15.73
	Mother_Gastro	Mother tuber of Gastrodia elata	12.66
	Mother_Juven	Mother tuber of Juvenile	14.97