Detail information of GWHGAAEX004922/evm.TU.scaffold_156.55
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|116624700|ref|YP_826856.1| | 1.00E-46 | Mn2+/Fe2+ transporter [Candidatus Solibacter usitatus Ellin6076] |
| KOG | KOG1291 | 0 | Mn2+ and Fe2+ transporters of the NRAMP family |
| nr | gi|672128605|ref|XP_008787796.1| | 0 | PREDICTED: ethylene-insensitive protein 2 isoform X2 [Phoenix dactylifera] |
| Swissprot | tr|Q9S814|EIN2_ARATH | 0 | Ethylene-insensitive protein 2 |
| trEMBL | tr|M0TDR8|M0TDR8_MUSAM | 0 | Ribosomal protein L15 {ECO:0000256|RuleBase:RU000663} |
| TAIR | AT5G03280 | 0 | NRAMP metal ion transporter family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000160 | 1678601 | 1731698 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004922
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01566.17 | Nramp | 52 | 404 | 9.70E-67 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K14513 | EIN2 | MAPK signaling pathway - plant | map04016 |
| Plant hormone signal transduction | map04075 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0030001 | Biological Process | metal ion transport |
| GO:0009873 | Biological Process | ethylene-activated signaling pathway |
| GO:0046873 | Molecular Function | metal ion transmembrane transporter activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 78.530 |
| SRR2545915 | Juvenile tuber | 61.910 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 35.080 |
| SRR5643514 | five period of Gastrodia elata | 38.260 | |
| SRR5643515 | five period of Gastrodia elata | 35.010 | |
| SRR5643524 | five period of Gastrodia elata | 36.980 | |
| SRR5643525 | five period of Gastrodia elata | 48.210 | |
| SRR5643528 | five period of Gastrodia elata | 45.270 | |
| SRR5643658 | five period of Gastrodia elata | 53.810 | |
| SRR5643659 | five period of Gastrodia elata | 32.950 | |
| SRR5643660 | five period of Gastrodia elata | 32.040 | |
| SRR5643661 | five period of Gastrodia elata | 28.010 | |
| SRR5643662 | five period of Gastrodia elata | 25.110 | |
| SRR5643663 | five period of Gastrodia elata | 29.860 | |
| SRR5643664 | five period of Gastrodia elata | 25.940 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 32.830 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 31.590 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 33.180 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 33.900 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 27.980 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 30.600 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 36.500 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 32.260 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 35.600 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 34.860 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 30.580 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 30.580 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 25.20 |
| Juven | Juvenile tuber | 50.09 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 32.95 | |
| Mother_Juven | Mother tuber of Juvenile | 36.90 |