Gene detail

Detail information of GWHGAAEX004927/evm.TU.scaffold_156.61

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743792980\|ref\|XP_010923814.1\|	2.94E-141	PREDICTED: F-box protein At5g46170-like [Elaeis guineensis]
Swissprot	tr\|Q9FNK5\|FB285_ARATH	1.00E-134	F-box protein At5g46170
trEMBL	tr\|A5ATM2\|A5ATM2_VITVI	1.00E-139	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN73778.1}
TAIR	AT5G46170	4.00E-134	F-box family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000160	1868677	1870475	+

Transcript Sequence
>GWHTAAEX004927 CTAAAATCCCACTGATTTCTCTTTAGGTTTTGGGATGGTCTTCCCGTCGCATTCAACGCGGGGTTCCGTTCTTCGGCCGGGTTCCCCCGTGGACTCCTTCTAGAGTTTCAATCTTGATTTTCTTCTTTAGGGTTTCTCACTTTTGGACGCATCGATGTCGGAGCGTTGGATCGGCGATGATCCGGCATCGTCGGCTTGGATGGAAGAGGATCAAGGGGCGGATCCCTTCGATCGGCTTCCCGATTCGATCCTCATCCTCGTCTTCAACGGGATCGGAGATGTGAAGGCGCTCGGCCGATGCTGCGCCGTCTCCCGCCGTTTTCGCTCCCTTGTTTTCCTCGTCGACAATGTCTCCGTCCGCGTCGATTGCGTCATCTCCGACCATGCATCCAATCCTTCTTCCTCCTCCGTCAGCCCGTCGGAGAAGACCCGTAACGCCCTGTCCCACTTCGCTCGATCCGTCATGGGCGGCTTCGCCCGCCATCTCTACGCCCTCGGCCAGATCCTCTCCTCCTCCTCCTCCTCTTCTTCGTCCAAGCGCCTTTCCTATGCTGAACCTTCCTCCTCGGAAGTCTATCACTACTCTCCATCCGAGGTTCTGAAGAACTTCAACGAGATCCGCCGCCTCCGGATCGAGCTCCCCGCCGGCGAGCTGGGACTCAGCGACGGGGCGCTTCTCAAGTGGAAGGCCGATTTCGGATCCACCATCAGTTCCTGCGTCATCCTCGGGGCCTCCTCCATCTTCCCCTCTTCTCCCCACTTCGAAAACCCTAGCCCAGCCGCCCCAGACCCCTGCTGCGAAGAAGACGGTTCCGGCATTCCCGAATCCTTCTACGCCAATGGCGGCCTCAAGCTTCGGGTTGTGTGGACCATCAGCTCGCTGATCGCCGCCTCCGCCCGCCATTTCCTCCTCCAGCCCATCGTCGCCGATCATCCAACATTGGAGTTCTTGGATCTCTTGGATGCCGACGGCCAGGGCCTATTGAGCATGAACAGAGGCCAGCTGCTGGAGCTGGCGTTGAACCCTGTCTCCGCCTCAGGCTCCTCTCAGAGGACGCTAATGCCTGCCCTCAGCATGCGACTCTGGTATGAGCCCATGCTGGAGATTCCCTGCGGAACGACTCTCAAGGGAGCCACCCTGGTGGCCATCCAGCCCAGCGACGAACCCTCCAGGGAGCTTTCGGCTGATTTTTCCTGGGTCTCCAATGCCTTCCAGGAGCCCTACCGCACCGCCGCAAGACTGCTTTTGCAGAGGAGGTCTTATTTTCTAGAGATGAATTCTTTCTAAAAGCCTTCAAGGATCCATGAAAGGATTCTCCTTTGGAGGTTGGTTTTTCACCAGAGAGCAGAAGCAGTGCTATCGTGCAGCATAATGGCTGTATCAGCTGTGTGGTAATCTTTGTATGACTTGCTAAATCTAAAGAGTGAAGAGAGGATTGGCACAATACACAATCAGAATCAGGGCACTGCCATTTCTCTCTTTTGCTCTTCTGATGCTTTTTTTCTAATTTTTTCTAATGTTTGGGGGCTTATTTGCGAACTTTGTTTTAGTTAGTATTTTAAGCCTAACTTACCAAAAATTATATATATAATCTTTTTGAGTATTTGAAGGAATTCATTCTAATTGGCTTTAGTGATTGTATATATTGGAAGTGCTGTTTTAGAAAGTGTTCTTATTTGAGTTTAATCCACATTAGAATATTTAATAATAAATAGCATCCTTATA

Network for GWHGAAEX004927

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12937.6	F-box-like	26	60	8.50E-06

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	22.380
SRP064423	SRR2545915	Juvenile tuber	21.060
SRP108465	SRR5643513	five period of Gastrodia elata	22.120
	SRR5643514	five period of Gastrodia elata	18.950
	SRR5643515	five period of Gastrodia elata	23.100
	SRR5643524	five period of Gastrodia elata	19.320
	SRR5643525	five period of Gastrodia elata	45.610
	SRR5643528	five period of Gastrodia elata	38.150
	SRR5643658	five period of Gastrodia elata	31.900
	SRR5643659	five period of Gastrodia elata	23.400
	SRR5643660	five period of Gastrodia elata	24.760
	SRR5643661	five period of Gastrodia elata	27.080
	SRR5643662	five period of Gastrodia elata	36.150
	SRR5643663	five period of Gastrodia elata	25.460
	SRR5643664	five period of Gastrodia elata	41.230
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	31.780
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	38.870
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	26.470
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	28.220
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	28.390
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	24.050
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	35.090
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	25.860
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	24.700
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	31.840
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	22.830
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	22.830
SRP279888	Gastro	Gastrodia elata tuber	29.52
	Juven	Juvenile tuber	42.27
	Mother_Gastro	Mother tuber of Gastrodia elata	73.16
	Mother_Juven	Mother tuber of Juvenile	67.48