Gene detail

Detail information of GWHGAAEX004933/evm.TU.scaffold_156.68

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1134	Uncharacterized conserved protein
nr	gi\|672122950\|ref\|XP_008784823.1\|	PREDICTED: CSC1-like protein ERD4 [Phoenix dactylifera]
Swissprot	tr\|Q9C8G5\|CSCLD_ARATH	CSC1-like protein ERD4
trEMBL	tr\|M0SRB3\|M0SRB3_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P23020_001}
TAIR	AT1G30360	Early-responsive to dehydration stress protein (ERD4)

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000160	2059910	2065993	+

Transcript Sequence
>GWHTAAEX004933 AAAAAAAAAAAAAAATCCAGAATAAATAAAATAAAATATATCCGTTGCCACTATGACACTGGGCTCACATCGATACCCACGCTGAGCATCCAATTCATTTTCTTCTTCTCTTAAATTCAGATCCGTTACCCTCTTTTCTACCAATCAATCAATCTGTCACCCAGATCCGAGCGAAGGAGGGATGGACTTCAATTCGTTCTTGACGTCGCTGGGGACGTCCTTTGTGATCTTCGTGGCGTTGATGCTGCTCTTCTCATGGCTGTCGAGACAGGAAGGGAACCAGGTTGTGTACTTCCCTGGCCGGATCTTGAGGGGACTCCACCCCTCCTACGCCGCCCGCCGCCCCAGCAGCCCTCTCGCTTGGCTTCGACAGGCTTTTACCGCCACCGAAGCCGACATCGTCGCCGCCGCCGGCGTCGATGCTGCCGTTTACTTGATTTTTCTCAGCTCCGTTCTGGGTATATTTGTGTTGTCCGGCATGATATTGATACCTGTTCTTCTTCCCATTGCTGCGACTGATCATGGCTACAAGTCCCTCGCCGATACCAACAGCAATGCCACTTTCAACAATCTCGATAAGCTGGCAATGGGCAATGTGCACGCCAAGAGTCCAAGATTATGGGCATTTCTTCTAGCAAACTATTGGGTCTCGTTGGTAACTTTCTATGTGTTATGGCAAGCCTACAAGCATGTTACTGATTTAAGATCAGCAGCCAGATCATGTTCAGAAGTGAGACCTGAGGACTATGCTATTTTAGTTAGGGATATCCCTACTGATCCTCAAGGTCAAAGCAGGAAAGAGCAGGTAGACTCCTATTTTAAAGCACTCCATCCAGATACATTCTACAAGTCAATGGTTGTCACAGACAATACAAAGGTCAATAAATTATGGGAAGAATTGGAAGGCTACAAAAAGAAACGTGCTCGTGCAGACGTGATTTTTGCAGAATCGAAAACTGAGAAAAATCCAGATGGAACTCGACCAACCAATAAAACCAGCTTTCTTGGTCTTTTTGGTAAAAAGGTTGACACAATCGATCACTGCAGTGAGAAGATAAACGAGTTAATCTCAAAATTAGAGATTATACAAAAAGAAACCCTCAGTGATAAGCAGCAAGCTGCAGCTTTGGTTTTCTTCAACAGCAGACAAGCTGCCATCTCAGCCTCTCAGACTCTTCATGCTCAAATCGTAGATACTTGGACAGTTACTGAAGCACCGGAACCAAGGCAGTTGATTTGGCAAAATTTAACTAAAAAGTTTTATGAGAGACAGATACGGAAATATGTCGTCTATGTTATTGTTTTTCTGACCGTAGTGTTTTACATGATTCCAATAGCGGCCATATCTGCGGTTACCACCCTACAGAACTTGAGGAGATACCTTCCCTTCCTGAAGGCCATTGTTGATCAGAAAGCAGTTAAGACGATCCTGGAAGCTTATCTTCCTCAGATTGCTCTCATTATATTCTTAGCATTGCTTCCAACTCTTCTTCTATTCCTGTCCAAGGCAGAAGGAATTCCGTCTCAGGCTCATGTGATCAGGGCAGCTTCCGGGAAGTACTTCTACTTCATTGTGTTCAATGTGTTTCTTGGAGTCACTGTGGGAGGGACATTGTTTAGCTCGTTGAAGACCATCACCAAAGAACCAAAGCAAATTGTGAATCTGCTGGCAGACAGCTTGCCTCCAAATGCAACATTTTTCGTGACTTATGTGGCGCTACAATTCTTTGTAGGGTATGGGCTTGAGCTTTCACGTTTGGTCCCTCTCATCATATTCCACCTGAAGAAGAAATATTTGTGCAAAACTGAAGCTGAAATGAAGGAAGCATGGGCTCCTGGAGACTTTGGCTTTGCCACTAGAGTTCCAAATGATATGCTTATAATGCTAGTGGTATTTTGCTATTTAGTAATATCTCCCATAATCATTCCCTTTGGCGTCATATACTTTGGCCTTGGGTGGCTTATTGCCCGCAACCAGGCGCTGAATGTGTATGTACCTTCGCTGGAGAGCTACGGGCGGATGTGGCCGCACATGCATACCCGGATCGTGGCCGCACTGATCATGTTCCAAGTGCTGATGTTCGGCTATTTGGGCCTGAAGAAGTTCATCTATGCGCCATTGATGATCCCTCTGATCTTGATCTCATTCGTCTTCTCTTACGCCTGCAACAATCGCTTCTATCGATCCTTCGCTCACACTCCACTGGAGGTGGCGTGCAAGAAGGACGATGGCAAGAACTCTTCAATCTCTGCTACTCCAAATCTGGAGTCCGTCTATACGGCTTTCGTTCCGCCATGCCTGAAGCCGGAGAAGCCCGATGAAGTCGACCATTTTGAAGACGCCCAGGCTACAATATCGAGAACCTCCTCCGTGTGATGTATTTATATATGCGGGTAAAGGCGGGGCGGCATCTATACATACATACCTTCCGCCCAGGCTACCATGTAAATTATGCTAGCTTTATTAGTTGGGTTGTTTTGGTAAAGATATTTTCTTGTATTTATGTTGGAGTAATGCTATAATGTTTCAAATTTTGTCTCAATCTTTTTTTTTTTTAAAAAGGACAGTTAATTATATATAAAATTTGGGCAAAACGGACGCACCGACCATCTATTATTAAAAAGATCAACTCTTTTAGCTTGTAAACTATCTAATTTTACTAATCTAAAAGCTAACACGAGTGCACCTTGGG

Network for GWHGAAEX004933

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module3

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13967.5	RSN1_TM	5	166	3.60E-34
PF14703.5	PHM7_cyt	188	355	6.50E-37
PF02714.14	RSN1_7TM	366	636	7.90E-79

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016020	Cellular Component	membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	73.670
SRP064423	SRR2545915	Juvenile tuber	85.550
SRP108465	SRR5643513	five period of Gastrodia elata	59.200
	SRR5643514	five period of Gastrodia elata	46.370
	SRR5643515	five period of Gastrodia elata	102.870
	SRR5643524	five period of Gastrodia elata	47.590
	SRR5643525	five period of Gastrodia elata	181.540
	SRR5643528	five period of Gastrodia elata	34.790
	SRR5643658	five period of Gastrodia elata	50.220
	SRR5643659	five period of Gastrodia elata	102.810
	SRR5643660	five period of Gastrodia elata	115.420
	SRR5643661	five period of Gastrodia elata	136.350
	SRR5643662	five period of Gastrodia elata	130.370
	SRR5643663	five period of Gastrodia elata	146.880
	SRR5643664	five period of Gastrodia elata	222.980
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	59.680
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	75.770
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	48.530
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	53.760
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	45.740
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	47.600
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	75.630
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	56.320
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	41.110
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	69.650
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	59.400
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	59.400
SRP279888	Gastro	Gastrodia elata tuber	109.03
	Juven	Juvenile tuber	40.12
	Mother_Gastro	Mother tuber of Gastrodia elata	24.88
	Mother_Juven	Mother tuber of Juvenile	21.81