Detail information of GWHGAAEX004935/evm.TU.scaffold_156.70


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG30958.00E-114Transcription initiation factor IIE, beta subunit
nrgi|743839308|ref|XP_010936965.1|3.76E-161PREDICTED: transcription initiation factor IIE subunit beta [Elaeis guineensis]
trEMBLtr|M0SNM9|M0SNM9_MUSAM1.00E-153Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P13640_001}
TAIRAT4G203308.00E-114Transcription initiation factor TFIIE, beta subunit

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000016021032882134095-
Transcript Sequence

Network for GWHGAAEX004935

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02186.14TFIIE_beta751344.50E-07
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03137TFIIE2, GTF2E2, TFA2 Basal transcription factors map03022

Gene Ontology

GO term OntologyName
GO:0006367Biological Processtranscription initiation from RNA polymerase II promoter
GO:0005673Cellular Componenttranscription factor TFIIE complex

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms18.460
SRR2545915Juvenile tuber34.960
SRP108465SRR5643513five period of Gastrodia elata18.360
SRR5643514five period of Gastrodia elata19.900
SRR5643515five period of Gastrodia elata19.810
SRR5643524five period of Gastrodia elata17.810
SRR5643525five period of Gastrodia elata26.170
SRR5643528five period of Gastrodia elata28.860
SRR5643658five period of Gastrodia elata27.910
SRR5643659five period of Gastrodia elata28.250
SRR5643660five period of Gastrodia elata25.950
SRR5643661five period of Gastrodia elata31.160
SRR5643662five period of Gastrodia elata32.750
SRR5643663five period of Gastrodia elata26.280
SRR5643664five period of Gastrodia elata37.940
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_120.190
SRR6049655Rhizomagastrodiae_C368-T10_good_124.400
SRR6049656Rhizomagastrodiae_C368-T07_good_120.870
SRR6049657Rhizomagastrodiae_C368-T07_good_119.190
SRR6049658Rhizomagastrodiae_C368-T04_good_119.790
SRR6049659Rhizomagastrodiae_C368-T04_good_117.950
SRR6049660Rhizomagastrodiae_C368-T01_good_118.510
SRR6049661Rhizomagastrodiae_C368-T04_good_121.090
SRR6049662Rhizomagastrodiae_C368-T01_good_122.650
SRR6049663Rhizomagastrodiae_C368-T01_good_123.840
SRR6049664Rhizomagastrodiae_C368-T10_good_124.220
SRR6049665Rhizomagastrodiae_C368-T10_good_124.220
SRP279888GastroGastrodia elata tuber 31.60
JuvenJuvenile tuber14.59
Mother_GastroMother tuber of Gastrodia elata 25.35
Mother_JuvenMother tuber of Juvenile 14.40