Detail information of GWHGAAEX004937/evm.TU.scaffold_156.72
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|166366565|ref|YP_001658838.1| | 2.00E-24 | WD repeat-containing protein [Microcystis aeruginosa NIES-843] |
| KOG | KOG0299 | 4.00E-149 | U3 snoRNP-associated protein (contains WD40 repeats) |
| nr | gi|672122876|ref|XP_008784782.1| | 0 | PREDICTED: LOW QUALITY PROTEIN: U3 small nucleolar RNA-interacting protein 2-like [Phoenix dactylifera] |
| Swissprot | tr|Q9FYR7|SCL8_ARATH | 7.00E-33 | Scarecrow-like protein 8 |
| trEMBL | tr|M0RGH1|M0RGH1_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P08450_001} |
| TAIR | AT4G05410 | 4.00E-149 | Transducin/WD40 repeat-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000160 | 2134496 | 2164229 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004937
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00400.31 | WD40 | 225 | 251 | 0.0024 |
| PF00400.31 | WD40 | 257 | 293 | 2.20E-05 |
| PF00400.31 | WD40 | 340 | 374 | 0.00086 |
| PF03514.13 | GRAS | 500 | 636 | 1.60E-30 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | GRAS |
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 7.230 |
| SRR2545915 | Juvenile tuber | 8.270 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 4.410 |
| SRR5643514 | five period of Gastrodia elata | 4.430 | |
| SRR5643515 | five period of Gastrodia elata | 4.510 | |
| SRR5643524 | five period of Gastrodia elata | 5.030 | |
| SRR5643525 | five period of Gastrodia elata | 3.020 | |
| SRR5643528 | five period of Gastrodia elata | 2.180 | |
| SRR5643658 | five period of Gastrodia elata | 1.670 | |
| SRR5643659 | five period of Gastrodia elata | 9.020 | |
| SRR5643660 | five period of Gastrodia elata | 9.390 | |
| SRR5643661 | five period of Gastrodia elata | 9.680 | |
| SRR5643662 | five period of Gastrodia elata | 9.200 | |
| SRR5643663 | five period of Gastrodia elata | 8.670 | |
| SRR5643664 | five period of Gastrodia elata | 7.640 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 6.420 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.500 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 6.190 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 6.340 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 7.080 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 7.010 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 8.660 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 7.510 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 7.590 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 7.070 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 5.390 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 5.390 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 9.90 |
| Juven | Juvenile tuber | 6.61 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 4.79 | |
| Mother_Juven | Mother tuber of Juvenile | 3.44 |