Gene detail

Detail information of GWHGAAEX004938/evm.TU.scaffold_156.75

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|743792420\|ref\|XP_010923678.1\|	PREDICTED: homeobox-leucine zipper protein HOX32 [Elaeis guineensis]
Swissprot	tr\|Q6AST1\|HOX32_ORYSJ	Homeobox-leucine zipper protein HOX32
trEMBL	tr\|I0IUI4\|I0IUI4_9ASPA	Class III homeobox-leucine zipper protein {ECO:0000313\|EMBL:BAM08933.1}
TAIR	AT2G34710	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000160	2260643	2267330	+

Transcript Sequence
>GWHTAAEX004938 ACAGCCCATCTTCCTCAGCTCCCCACTTCTCTCCTCTGCTCCCTCTTCTCTCTGATGAAGCTTTTTGAACCTTCGAGGAATGCGAAGCGAGCGTGATGGAGAAATAGGGTTTTCCGCCTCGTTCTCGGCGGCTTATTGGCGCTGGTAATGCGGGAAGGAGGAGCGGTATCCACTCTGCTGAGGTGGCCGAGGAGTCGGAGGCAAGTCGAGGCGTCATCGGCTCTGCAAGAGCCTCAGACTCCCTTTCTCTGTTTGAATCTTGCTAGGGTTTTTTGAAATGGCGATGGTTGTGAGCGGAAAGGACGCGGGGAAGCAGCAGATGGATTCCGGGAAGTATGTGAGGTACACGCCGGAGCAAGTAGACGCGCTCGAGAGGGTTTACAGTGAGTGTCCGAAACCTAGCTCCTTGAGGAGGCAGCAGCTTATTAGGGAGTGCCCTATACTGTCAAACATTGAGCCTAAGCAGATCAAGGTCTGGTTTCAAAATCGCAGATGCCGGGAGAAGCAAAGGAAGGAATCCTCTCGTCTTCAAACTGTTAATAGGAAATTGACTGCTATGAACAAGCTGCTTATGGAAGAAAATGATCGCTTACAGAAGCAAGTTTCTCAGTTGGTATATGAGAATGGTTACATGCGTCAGCAGATTCATACTACACCCGTGTCTACAACAGACACTAGCTGTGAATCTGTGGTGACGAGCGGTCAACATCATCAGCAGCAAAACCCAACTCCCCAGCATCCTCCAAGGGATGCTAACAACCCAACTGGCCTACTCGCAATTGCTGAGGAGACCTCCGCAGAGTTCCTGTCGAAAGCAACAGGGACTGCTGTTGAATGGGTTCAAATGGTTGGTATGAAGCCTGGTCCGGATTCTATTGGAATCATTGCTGTTTCCCACAATTGCAGTGGTGTAGCAGCTCGTGCTTGCGGCCTTGTGAGTTTAGAACCCACTAAGGTCGCAGAGATACTCAAAGATCGTCTAAGTTGGTATCGAGATTGTCGATCTCACGATGTGTTAACTGTTATCCCTGCTGGCAATGGTGGGAATATTGAACTAATATATATGCAGACATACGCACCTACAACTCTGGCATCAGCACGGGATTTTTGGACTCTTAGATATACTGCAGGTTTAGAAGATGGCAGCCTGGTGATTTGTGAGAGATCTTTGACTCCTTTGACCGGTGGTCCAACTGGTCCCCCTAGTGCTAATTTTGTAAGAGCCGAGATTCTTCCTAGTGGTTATCTTATCAGACCTTGTGAAGGCGGTGGTTCAATGATTTACATTGTTGATCATGTTGATTTGGATGCTTGGAGTGTTCCAGAAGTTTTAAGGCCCTTGTATGAGTCACCTAAAATTTTGGCTCAAAAATTAACCATTGCTGCACTGCGTCATATTAGGCAGATTGCTCAAGAAAGCAATAGTGAAATTTCCTATGCTGGGGGGCGTCAGCCCACTGTACTAAGAACTTTCAGCCAGAGAATGAGCAGGGGTTTCAATGATGCTATAAATGGGTTTCCTGATGATGGCTGGTCTTTAATGGGAAGCGATGGGGTGGAGGATGTGACAATTGCTATCAACTCTTATCCAAATAAGATTCTTGGGGGCCATTCAAGCTCTGCAATTCTTTCTTCCCTGGGAGGAGGCATCTTATGTGCAAAAGCATCCATGCTACTCCAGAACGTGCCACCTGCTTTACTAGTTCAGTTTCTTAGGGAGCATCGTTCTGAATGGTCTGACTCAGGCGCCGATGCATATTCTGCAGCTTCACTAAGAGCCAGCCCTTTTGCTGTCCCTGGTTTGAGGGTCAATAGTGGTTTTTTGGGCAGCCACTCTATTATTCCTCTTGCTCATACTGTAGAAAATGAAGAAATCTTGGAAGTTGTTAGGCTAGAAAGTGCTGGTGGCTTTGGCCAGGAAGATATCCTATCTAGTAGGGACATGTATTTATTGCAGCTATGCAGTGGTATTGACGAGAATGCGGTGGGCTCCTGTGCCCAACTTGTATTTGCACCCATTGATGAATCTTTTGCCGATGATGCTTTTCTCCTTCCTTCTGGGTTTCGAGTGATACCACTAGATGCAAAAACAGACCCGCCGTCTGCTACTAGGACCCTTGATCTTGCCTCGGCTTTAGAAATTGGAGGAGGCGCCAATGGAAGGGTTGCCAGTGATATTGTATCAAATTCGAGCAATCTAAGATCAGTTTTGACAATTGCATTCCAATTTATGTTCGAGAACCACCTTCGAGAAAATGTCATTGCAATGGCTCGACAATACGTCCGAAGTGTTGTGGCATCTGTCCAGAGGGTTGCTATGGCAATCTCTCCGTCAAGACTCGGCTCTCAATTAGGCATGAAGCACACTCCTGGCTCTCCTGAAGCTCACACTCTTGCACGATGGATTTCTCGAAGTTACAGGTTCCACACTGGAGTCGAACTCTTGAGAACTGATTCTCAAGCCACCGAAACCCTAAAACTTTTGTGGCACCACTCCGATGCAATCATGTGCTGTTCTCTCAAGGCTTCCCCTCTGTTCACTTTCGCAAACCAAGCCGGGCTAGACCTGCTGGAAACCACTCTAGTCGCCCTCCAAGACATTTCGCTTGAGAAGATACTTGATGACACTGGACGAAAGCTGCTCTGCTCCGAGTTCCCTAAGATAATGCAGCAGGGGTTTGCCTACCTGCCGGCGGGCATCTGCATGTCCAGCATGGGGCGTCCGGTGTCCTACGAACAGGCCATCACATGGAAGGTGCTAAACGAAGGGGACTGCCCCCACTGTTTAGCGTTCATGTTTGTGAATTGGTCTTTTGTTTGAGAGCCATGCTAGTCTTAGGTATCTAACAGTATGCTATATTTATGCCCTGTTTTATAACTGTTATTCAGTAGTTAATTGTAGCTGTTTTGTTGCTTACATCTATATATATTATGTCTATTTGCCCTTTGGCTGGCATTCTGTGTGTAAACTTGTCAAGATGCTAAATATGTGAAGAAACAAACTACTTTGGCGTCCTATTTTGGATTTTGGTTTTCAATGAAACTTGAAGGAGCTTGATCTTTTTTGTTGTTCTAAACTTGAAGATAATAGAGACCTATTTT

Network for GWHGAAEX004938

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module7

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00046.28	Homeobox	20	77	1.10E-15
PF01852.18	START	168	375	2.40E-49
PF08670.10	MEKHLA	705	846	1.90E-51

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	HB-HD-ZIP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008289	Molecular Function	lipid binding
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	5.920
SRP064423	SRR2545915	Juvenile tuber	7.970
SRP108465	SRR5643513	five period of Gastrodia elata	8.320
	SRR5643514	five period of Gastrodia elata	11.670
	SRR5643515	five period of Gastrodia elata	7.870
	SRR5643524	five period of Gastrodia elata	8.600
	SRR5643525	five period of Gastrodia elata	2.220
	SRR5643528	five period of Gastrodia elata	1.570
	SRR5643658	five period of Gastrodia elata	1.990
	SRR5643659	five period of Gastrodia elata	9.650
	SRR5643660	five period of Gastrodia elata	7.060
	SRR5643661	five period of Gastrodia elata	6.450
	SRR5643662	five period of Gastrodia elata	4.160
	SRR5643663	five period of Gastrodia elata	1.760
	SRR5643664	five period of Gastrodia elata	4.260
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	11.290
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	11.430
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	11.150
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	9.230
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	7.760
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	5.680
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	9.180
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	9.560
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	19.690
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	10.780
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	15.020
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	15.020
SRP279888	Gastro	Gastrodia elata tuber	4.58
	Juven	Juvenile tuber	20.73
	Mother_Gastro	Mother tuber of Gastrodia elata	1.23
	Mother_Juven	Mother tuber of Juvenile	3.75