Detail information of GWHGAAEX004940/evm.TU.scaffold_156.79


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG01311.00E-32Splicing factor 3b, subunit 4
nrgi|721637851|ref|XP_010231343.1|3.06E-51PREDICTED: splicing regulator RBM11 isoform X2 [Brachypodium distachyon]
Swissprottr|Q9FMG4|SC35_ARATH7.00E-07Serine/arginine-rich splicing factor SC35
trEMBLtr|I1HJ65|I1HJ65_BRADI1.00E-51Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI2G24690.4}
TAIRAT4G101101.00E-32RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000016023937952399933+
Transcript Sequence

Network for GWHGAAEX004940

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.21RRM_13669.70E-11
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K12831SF3B4, SAP49 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms13.900
SRR2545915Juvenile tuber12.630
SRP108465SRR5643513five period of Gastrodia elata9.940
SRR5643514five period of Gastrodia elata9.040
SRR5643515five period of Gastrodia elata9.300
SRR5643524five period of Gastrodia elata8.380
SRR5643525five period of Gastrodia elata12.220
SRR5643528five period of Gastrodia elata14.290
SRR5643658five period of Gastrodia elata16.150
SRR5643659five period of Gastrodia elata11.220
SRR5643660five period of Gastrodia elata11.130
SRR5643661five period of Gastrodia elata9.510
SRR5643662five period of Gastrodia elata8.380
SRR5643663five period of Gastrodia elata11.850
SRR5643664five period of Gastrodia elata10.240
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_19.810
SRR6049655Rhizomagastrodiae_C368-T10_good_113.130
SRR6049656Rhizomagastrodiae_C368-T07_good_17.670
SRR6049657Rhizomagastrodiae_C368-T07_good_112.490
SRR6049658Rhizomagastrodiae_C368-T04_good_111.990
SRR6049659Rhizomagastrodiae_C368-T04_good_114.370
SRR6049660Rhizomagastrodiae_C368-T01_good_19.700
SRR6049661Rhizomagastrodiae_C368-T04_good_110.970
SRR6049662Rhizomagastrodiae_C368-T01_good_17.110
SRR6049663Rhizomagastrodiae_C368-T01_good_18.610
SRR6049664Rhizomagastrodiae_C368-T10_good_18.920
SRR6049665Rhizomagastrodiae_C368-T10_good_18.920
SRP279888GastroGastrodia elata tuber 11.29
JuvenJuvenile tuber10.70
Mother_GastroMother tuber of Gastrodia elata 15.78
Mother_JuvenMother tuber of Juvenile 13.18