Detail information of GWHGAAEX004943/evm.TU.scaffold_157.1
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0483 | 3.00E-73 | Transcription factor HEX, contains HOX and HALZ domains |
| nr | gi|297739823|emb|CBI30005.3| | 3.13E-77 | unnamed protein product [Vitis vinifera] |
| Swissprot | tr|A2Z1U1|HOX11_ORYSI | 2.00E-73 | Homeobox-leucine zipper protein HOX11 |
| trEMBL | tr|A0A061F4R6|A0A061F4R6_THECC | 2.00E-75 | Homeobox from {ECO:0000313|EMBL:EOY09524.1} |
| TAIR | AT5G06710 | 3.00E-73 | homeobox from Arabidopsis thaliana |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000153 | 77803 | 80331 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004943
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module3 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00046.28 | Homeobox | 121 | 175 | 4.20E-15 |
| PF02183.17 | HALZ | 177 | 211 | 2.00E-11 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | HB-HD-ZIP |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.500 |
| SRR2545915 | Juvenile tuber | 3.060 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 5.540 |
| SRR5643514 | five period of Gastrodia elata | 4.430 | |
| SRR5643515 | five period of Gastrodia elata | 3.690 | |
| SRR5643524 | five period of Gastrodia elata | 2.950 | |
| SRR5643525 | five period of Gastrodia elata | 1.370 | |
| SRR5643528 | five period of Gastrodia elata | 1.820 | |
| SRR5643658 | five period of Gastrodia elata | 3.050 | |
| SRR5643659 | five period of Gastrodia elata | 10.580 | |
| SRR5643660 | five period of Gastrodia elata | 12.120 | |
| SRR5643661 | five period of Gastrodia elata | 12.600 | |
| SRR5643662 | five period of Gastrodia elata | 18.750 | |
| SRR5643663 | five period of Gastrodia elata | 19.170 | |
| SRR5643664 | five period of Gastrodia elata | 27.650 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 9.260 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 21.650 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 11.010 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 6.230 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 8.970 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 6.940 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 6.650 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 6.960 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 9.790 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 7.700 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 27.110 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 27.110 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 40.82 |
| Juven | Juvenile tuber | 11.89 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 5.97 | |
| Mother_Juven | Mother tuber of Juvenile | 2.55 |