Detail information of GWHGAAEX004945/evm.TU.scaffold_157.5


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|183221259|ref|YP_001839255.1|6.00E-17putative cyclic-nucleotide-gated cation channel [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)']
KOGKOG04980K+-channel ERG and related proteins, contain PAS/PAC sensor domain
nrgi|743823256|ref|XP_010932484.1|0PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic [Elaeis guineensis]
Swissprottr|Q9LD37|CNG20_ARATH0Probable cyclic nucleotide-gated ion channel 20, chloroplastic (Precursor)
trEMBLtr|I1P4Q8|I1P4Q8_ORYGL0Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA02G0296400.1}
TAIRAT3G177000cyclic nucleotide-binding transporter 1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000153324046403215+
Transcript Sequence

Network for GWHGAAEX004945

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00520.30Ion_trans1855101.00E-22
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K05391CNGC Plant-pathogen interaction map04626

Gene Ontology

GO term OntologyName
GO:0055085Biological Processtransmembrane transport
GO:0006811Biological Procession transport
GO:0005216Molecular Functionion channel activity
GO:0016020Cellular Componentmembrane

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms32.440
SRR2545915Juvenile tuber27.460
SRP108465SRR5643513five period of Gastrodia elata26.810
SRR5643514five period of Gastrodia elata15.050
SRR5643515five period of Gastrodia elata28.150
SRR5643524five period of Gastrodia elata22.120
SRR5643525five period of Gastrodia elata20.830
SRR5643528five period of Gastrodia elata26.820
SRR5643658five period of Gastrodia elata17.050
SRR5643659five period of Gastrodia elata15.550
SRR5643660five period of Gastrodia elata15.390
SRR5643661five period of Gastrodia elata17.730
SRR5643662five period of Gastrodia elata18.370
SRR5643663five period of Gastrodia elata18.240
SRR5643664five period of Gastrodia elata12.810
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_114.430
SRR6049655Rhizomagastrodiae_C368-T10_good_116.260
SRR6049656Rhizomagastrodiae_C368-T07_good_116.280
SRR6049657Rhizomagastrodiae_C368-T07_good_116.740
SRR6049658Rhizomagastrodiae_C368-T04_good_113.300
SRR6049659Rhizomagastrodiae_C368-T04_good_114.680
SRR6049660Rhizomagastrodiae_C368-T01_good_118.100
SRR6049661Rhizomagastrodiae_C368-T04_good_115.360
SRR6049662Rhizomagastrodiae_C368-T01_good_116.490
SRR6049663Rhizomagastrodiae_C368-T01_good_114.500
SRR6049664Rhizomagastrodiae_C368-T10_good_117.970
SRR6049665Rhizomagastrodiae_C368-T10_good_117.970
SRP279888GastroGastrodia elata tuber 14.30
JuvenJuvenile tuber18.40
Mother_GastroMother tuber of Gastrodia elata 29.54
Mother_JuvenMother tuber of Juvenile 23.41