Gene detail

Detail information of GWHGAAEX004947/evm.TU.scaffold_157.7

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|743773855\|ref\|XP_010917280.1\|	PREDICTED: protein NRDE2 homolog isoform X1 [Elaeis guineensis]
trEMBL	tr\|K3YPF1\|K3YPF1_SETIT	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Si016143m}
TAIR	AT3G17740_2	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000153	484516	559710	-

Transcript Sequence
>GWHTAAEX004947 CGCCAGCCTGCACTTAGACGAACGGCCCTCATCTTCTCCGGTACATCGGAGTTTTTCCTACGAACTCTCCAACACTGAGAAAAGATGATAAATTTGATGCATTTTGAAAATTTGGATGATAAATTTAAGAGGGAAAAAAGATCTGCAGCAAAGCGTTGCCCAAAACTTTGTGATTTCAGAGGAAGCGTCCTATGCACAGATGGATAGTCTGGACACCAGGAGGCTGGAGGCGACTGCAAAAGAGAGGGGACAAGAAGAGATGCAGCATCAGCCCCAATCATCGCCTTTATTTCCTCTCTGCCACCTCTCCTCAGACGTTTCTCCCGCTTTACGTGAGTCTTCCGAAGCAACGACGTGGCTTAGCAACCCCAGCTTCACCTTCGATGTCTCAACCGTTCCGGCCACCGTTGTGCCCTCCTTCCCAATGGCTTCAACCCTCGAAGACTCCGATGAAGATGGCCCTGAGGCACCAAAGAATCCGTCCTATGAGCCCATGCCTTCGTTGTCTTCGTCGGATTTGGAGCGGCATTCAGAGCTGAAAGAGAAAAGGAGGAGGAGAAAGAGAAAGAGACAGAAGTTAGGCTACGAATCTTCCAGAAAGTCGGGTGTTCGAGCTTGGATTGGCTCTGATACTAAGCCCGGCAAAGATTACTATTTTGATGTTCATGGTGATCGAGATAATTTAGCGTTTGGTTGCCTCTACAGGATGGATGTTGCACGATACAAGTTTCAGAACCATTCTGATCGGGCAGAGCTTGATTTTGAGCTGTTATGTCACCGTAGATCTTCAATTTTTGGCATGGATATTGATCATGACCTAGATGTATTGGATACCAAATTGAAAGTGGGTGGCCGCTATTATTCTGTGAAATTCACAGCCTTGGAAAGATACAAGGGCTTTAAACATGTAAAAATTATTGAGAAGAAGCCCTCATTAATTCCTGGCGAATACATTCCTCTAGTGGAACTACATACAACCATTGGGAATGACAGGAATGAATTAAATAGAGATGTGAATCTGGAAGAATCTTGGGAGGATGAACTATTACGTAGAACAAGAGAGTTAAACAAAATGTCAAGGGACTTTCCTCATGACGAGAAAGTCTGGTTAGCTTTTGCTGAATTTCAGGATAAAATTGCAAGCACGCAGTCACAAAAAGCTGCTAGGTTGCAGACACTTGAGAAGAAAATTAGTATTTTGGAAAAGGCTATTGATCTCAATCCGGATAATGAAGAATTGTTGCTTTTTCTCTTAAAGTCATACCGAGAGCGAGATACAACCGAAACCCTTGTGGAAAGATGGGGGAAAATGCTTGTGCGGCATTATGATAGTGTTATACTATGGAAAGGATACTTGCTTGTACGTCAGGGAGAGTTTTCCCTTTTTAAAGTCACTGATATCAGGAAAGCGTATAGTCATGCCATCCAAGCTCTGTCATCTGCTTGCAACAAGCTTTATAGACAGGATTACCAAGCTTATAATTTCAAATGTAAGGATTCTTCCTTGGTTGAACTAGAGCTTGGCTTGGTTGATATTTTTGTTAATTTGTGTCGATTTGAATGGCAAACCGGCCACCAAGAGTTAGCTACAGGCTTATTTCAAGCAGAAATTGAGTATAGTTTGTTTTGTCCTTCTCTACTTCTCAGTTTGCATAGTAAACAAAAACTCTTTGAACACTTTTGGAATAGTAGTGGTGCAAGACTTGGTGAGGATGGAGCTCTTGGGTGGTCTATTTGGCTGGAAAAAGAAGAACATAATAGGAAAGACACCATATCTGAAGAAATAGTGGAAGAATCTGAAGGAGGCTGGTCCGGTTGGATGGATCGTTTTCCCAAGGAGCCTACACCTAAAGAAGAAATTTTAGAGGAGCGCTTGGATATTGATAATACTGAAGCCAATCCTGATAATGGAGGTATCCCACTGAATGATGATGTTGAAGATTTGTTAAAGAAGCTTGGGATTGATGTAGATGCTGATCCTCTCACTGAGGTTAAAGATACTGCAACTTGGAAAAAATGGTCGCAAGAAGAGCTATCAAGGGATTCAGCTGAATGGATGCCTATTCGAGGAGATTCTGGAAATTGTGGAAGTTTAGCCTCACCTTACCATGAGGATATTCAAAATATGAACAGAAATGGACAGCTTTCAAGGGTGATATTATTTGAAGATGTAAATGAATATTTGTTTTCCCTGTGCTCGAATGAAGCTCGATACTCTTTGGTTTCTCAATTTGTTGAATTCTTTGGAGGAAAAATTTCTCGTTGGACATGTACAAACAATGCAACATGGATGGAAAAAGTTATCAGCCTAGAATCATTGGAAGAATCTACTTTGGAAGATTTAGTAGCTGTTTCTAGAGTGTGTAATAGAGATGATCATTCAGCTCCTTTGGGCTTAGAATCCCTTTTGGGAAATAAAAATGATATGTTTAGGAATACAAGTGCCATGAAGTTTCTTCGAAATGCAATTTTACTTTGCCTGAATGCTTTCCCACGTAACTATATTTTGGAGGAAGCTCTTATTGCTGCTGAAGAGTTATCTTTTACCCCTACGTGTACTTCTATTCCTTCAAATCTTTCAAGGTCTTTAGCCAAATCTCTTCTGAAAAAAGATCGGCAGGACTTGCTACTTTGTGGTGTTTATGCACGAAGTGAGGCTGCTTATGGGAACCTTGAAATTGCAAGAAAAATTTTTGACATGGCTTTATCTTCTGCCAATGGACTACCGATGGAACTTAAAGAACACATCCCGCTTTTATACCTATGGTATGCAGAAGTGGAATTGGCAGCATGCAACTCAAGTAGCAACACTGATCAGTGCTTGCAACGTGCCGTGCACATATTATCCTGCTTAGGTGGTAACTCAAAGTACAGTCTTTTTACATCTCAGTCATCTGGTTTGGAGATTTTGAGAGCACGACAAGGCTTCAAAGAACAAGTTAAAAATTTACGCTCTTCGTGGGCTCATGGTGATGTTAAAGAATCTTCAGTTGCTCTCATTCGCTCAGCATTTTTGTTTGAGCTCTTAACTTCTGGATGGTCTGCTAGTATTCAAATTATAGAAGAAGCTTTCTCCATGACACTTCCAGAAAGAAGAAGCCATAGTTTTCAACTTGAATCTTTGTGGATGCATTATATTGATGCGCTTCAAAAGTGTATGGACCAGTTGAGGTTTTCAAGAGCGTGGGAAGTTTTAGCTCAGAGCTTACAAATGTATCCTTACAACCCAAGGAGCTTCAGTGCTATGGTTCAAGTGTGTTCCCGTTTCACTTCGCGGCACAGAGTTAGGCAGATATTCGATGAATATATGCAGAGGAAACCATCGATGATTGCATGGCTTTTTGCATTTTCATTTGAGTTGGGTGAGTCCGGTACAGAGCATAGAATTCATGGTTTGTTTGAAAAAGCAGTGGCAAATGATATATTGCAAAAATCGGTGCTGCTTTGGCGCTGCTATCTAGCTTATGAAACGGACGTGGCATGCAATCTCCCTGCAGCCAAGCGAATTTTCTTCAGGGCTATTCATGCCTGTCCATGGTCAAAAAGGCTTTGGCTGGATGGGTTTCAGAGATTAAGCACTATACTGACTGCAAAGGAGCTCTCGGATCTTCAGGGAGTCATGCGGGACAAAGAACTATGCATCAGAACTGACATCTATGAAATCCTTTTGCAAGAAGACGAAACAATGGACCCATGATGCTAACCAACTTCATCACACATCCATTTTTTTTTATATTTCTCAACTCTTTTTACTTGTATATAATATATATATATATATATAACAGATTTCTGTAAAGTAGATCGACATTGCAGTGACAATATTTGATTTATAAGGGTTTGGGGCAGAAAAATTTTCTTTTTTTCTGGTTCTCTTACCTAAACTATATATTTGAAGTCTTATTCATGGACCAAAAGTTATCTGCGGTCGACATTAATTTTGGCTGGGCTTTGTACAATAAGTTTTTTTTTTTCTTATTCAATTGACAGTTAAACAGTCTTAATGTATACACATTTTGGAAGTTTTTCAAATCAACGATGCGTTTATGGTGACCTATAAAGCACTATGACTGC

Network for GWHGAAEX004947

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08424.9	NRDE-2	313	712	4.80E-84

Protein Sequence

>GWHPAAEX004947
MINLRGKKDLQQSVAQNFVISEEASYAQMDSLDTRRLEATAKERGQEEMQHQPQSSPLFPLCHLSSDVSPALRESSEATTWLSNPSFTFDVSTVPATVVPSFPMASTLEDSDEDGPEAPKNPSYEPMPSLSSSDLERHSELKEKRRRRKRKRQKLGYESSRKSGVRAWIGSDTKPGKDYYFDVHGDRDNLAFGCLYRMDVARYKFQNHSDRAELDFELLCHRRSSIFGMDIDHDLDVLDTKLKVGGRYYSVKFTALERYKGFKHVKIIEKKPSLIPGEYIPLVELHTTIGNDRNELNRDVNLEESWEDELLRRTRELNKMSRDFPHDEKVWLAFAEFQDKIASTQSQKAARLQTLEKKISILEKAIDLNPDNEELLLFLLKSYRERDTTETLVERWGKMLVRHYDSVILWKGYLLVRQGEFSLFKVTDIRKAYSHAIQALSSACNKLYRQDYQAYNFKCKDSSLVELELGLVDIFVNLCRFEWQTGHQELATGLFQAEIEYSLFCPSLLLSLHSKQKLFEHFWNSSGARLGEDGALGWSIWLEKEEHNRKDTISEEIVEESEGGWSGWMDRFPKEPTPKEEILEERLDIDNTEANPDNGGIPLNDDVEDLLKKLGIDVDADPLTEVKDTATWKKWSQEELSRDSAEWMPIRGDSGNCGSLASPYHEDIQNMNRNGQLSRVILFEDVNEYLFSLCSNEARYSLVSQFVEFFGGKISRWTCTNNATWMEKVISLESLEESTLEDLVAVSRVCNRDDHSAPLGLESLLGNKNDMFRNTSAMKFLRNAILLCLNAFPRNYILEEALIAAEELSFTPTCTSIPSNLSRSLAKSLLKKDRQDLLLCGVYARSEAAYGNLEIARKIFDMALSSANGLPMELKEHIPLLYLWYAEVELAACNSSSNTDQCLQRAVHILSCLGGNSKYSLFTSQSSGLEILRARQGFKEQVKNLRSSWAHGDVKESSVALIRSAFLFELLTSGWSASIQIIEEAFSMTLPERRSHSFQLESLWMHYIDALQKCMDQLRFSRAWEVLAQSLQMYPYNPRSFSAMVQVCSRFTSRHRVRQIFDEYMQRKPSMIAWLFAFSFELGESGTEHRIHGLFEKAVANDILQKSVLLWRCYLAYETDVACNLPAAKRIFFRAIHACPWSKRLWLDGFQRLSTILTAKELSDLQGVMRDKELCIRTDIYEILLQEDETMDP

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006396	Biological Process	RNA processing
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	15.780
SRP064423	SRR2545915	Juvenile tuber	15.950
SRP108465	SRR5643513	five period of Gastrodia elata	9.110
	SRR5643514	five period of Gastrodia elata	9.460
	SRR5643515	five period of Gastrodia elata	9.200
	SRR5643524	five period of Gastrodia elata	9.730
	SRR5643525	five period of Gastrodia elata	9.450
	SRR5643528	five period of Gastrodia elata	9.660
	SRR5643658	five period of Gastrodia elata	9.500
	SRR5643659	five period of Gastrodia elata	9.700
	SRR5643660	five period of Gastrodia elata	10.240
	SRR5643661	five period of Gastrodia elata	7.160
	SRR5643662	five period of Gastrodia elata	7.790
	SRR5643663	five period of Gastrodia elata	9.230
	SRR5643664	five period of Gastrodia elata	8.690
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	7.550
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	6.390
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	7.960
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	8.540
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	8.760
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	9.110
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	7.650
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	8.220
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	7.280
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	6.940
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	8.910
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	8.910
SRP279888	Gastro	Gastrodia elata tuber	7.88
	Juven	Juvenile tuber	10.22
	Mother_Gastro	Mother tuber of Gastrodia elata	9.95
	Mother_Juven	Mother tuber of Juvenile	11.95