Detail information of GWHGAAEX004948/evm.TU.scaffold_157.9


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|325959386|ref|YP_004290852.1|3.00E-06glutamate decarboxylase [Methanobacterium sp. AL-21]
KOGKOG13835.00E-13Glutamate decarboxylase/sphingosine phosphate lyase
nrgi|743823264|ref|XP_010932487.1|1.46E-12PREDICTED: glutamate decarboxylase 4-like [Elaeis guineensis]
Swissprottr|P54767|DCE_SOLLC1.00E-13Glutamate decarboxylase
trEMBLtr|W5DEE9|W5DEE9_WHEAT2.00E-12Glutamate decarboxylase {ECO:0000256|RuleBase:RU361171}
TAIRAT5G173305.00E-13glutamate decarboxylase

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000153594937604700-
Transcript Sequence

Network for GWHGAAEX004948

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module1

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K01580E4.1.1.15, gadB, gadA, GAD Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Butanoate metabolismmap00650
Pyrimidine metabolismmap00240
beta-Alanine metabolismmap00410
Taurine and hypotaurine metabolismmap00430
Quorum sensingmap02024
GABAergic synapsemap04727

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms0.000
SRR2545915Juvenile tuber0.000
SRP108465SRR5643513five period of Gastrodia elata0.090
SRR5643514five period of Gastrodia elata1.490
SRR5643515five period of Gastrodia elata0.500
SRR5643524five period of Gastrodia elata1.040
SRR5643525five period of Gastrodia elata8.920
SRR5643528five period of Gastrodia elata8.940
SRR5643658five period of Gastrodia elata8.720
SRR5643659five period of Gastrodia elata0.150
SRR5643660five period of Gastrodia elata0.000
SRR5643661five period of Gastrodia elata0.160
SRR5643662five period of Gastrodia elata0.160
SRR5643663five period of Gastrodia elata0.120
SRR5643664five period of Gastrodia elata0.300
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_10.000
SRR6049655Rhizomagastrodiae_C368-T10_good_10.000
SRR6049656Rhizomagastrodiae_C368-T07_good_10.000
SRR6049657Rhizomagastrodiae_C368-T07_good_10.060
SRR6049658Rhizomagastrodiae_C368-T04_good_10.000
SRR6049659Rhizomagastrodiae_C368-T04_good_10.000
SRR6049660Rhizomagastrodiae_C368-T01_good_10.000
SRR6049661Rhizomagastrodiae_C368-T04_good_10.000
SRR6049662Rhizomagastrodiae_C368-T01_good_10.000
SRR6049663Rhizomagastrodiae_C368-T01_good_10.000
SRR6049664Rhizomagastrodiae_C368-T10_good_10.000
SRR6049665Rhizomagastrodiae_C368-T10_good_10.000
SRP279888GastroGastrodia elata tuber 0.39
JuvenJuvenile tuber0.27
Mother_GastroMother tuber of Gastrodia elata 2.79
Mother_JuvenMother tuber of Juvenile 1.90