Detail information of GWHGAAEX004949/evm.TU.scaffold_157.10
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG3389 | 1.00E-64 | NADH:ubiquinone oxidoreductase, NDUFS4/18 kDa subunit |
| nr | gi|695072549|ref|XP_009383401.1| | 6.32E-96 | PREDICTED: double-stranded RNA-binding protein 8 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q0IQN6|DRB8_ORYSJ | 7.00E-84 | Double-stranded RNA-binding protein 8 |
| trEMBL | tr|M0RRC4|M0RRC4_MUSAM | 6.00E-94 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P11440_001} |
| TAIR | AT5G67590 | 1.00E-64 | NADH-ubiquinone oxidoreductase-related |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000153 | 609901 | 646993 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004949
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04800.11 | ETC_C1_NDUFA4 | 53 | 148 | 1.60E-31 |
| PF00035.25 | dsrm | 332 | 394 | 9.20E-11 |
| PF00035.25 | dsrm | 417 | 478 | 2.00E-14 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0022900 | Biological Process | electron transport chain |
| GO:0016651 | Molecular Function | oxidoreductase activity, acting on NAD(P)H |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 16.790 |
| SRR2545915 | Juvenile tuber | 23.280 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 30.760 |
| SRR5643514 | five period of Gastrodia elata | 38.180 | |
| SRR5643515 | five period of Gastrodia elata | 33.560 | |
| SRR5643524 | five period of Gastrodia elata | 40.210 | |
| SRR5643525 | five period of Gastrodia elata | 36.130 | |
| SRR5643528 | five period of Gastrodia elata | 43.510 | |
| SRR5643658 | five period of Gastrodia elata | 42.990 | |
| SRR5643659 | five period of Gastrodia elata | 26.000 | |
| SRR5643660 | five period of Gastrodia elata | 27.760 | |
| SRR5643661 | five period of Gastrodia elata | 28.870 | |
| SRR5643662 | five period of Gastrodia elata | 28.300 | |
| SRR5643663 | five period of Gastrodia elata | 28.420 | |
| SRR5643664 | five period of Gastrodia elata | 24.470 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 23.720 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 18.370 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 25.930 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 19.920 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 25.880 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 24.930 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 22.460 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 25.100 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 30.610 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 29.810 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 32.630 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 32.630 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 28.90 |
| Juven | Juvenile tuber | 28.67 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 22.47 | |
| Mother_Juven | Mother tuber of Juvenile | 22.33 |