Detail information of GWHGAAEX004951/evm.TU.scaffold_157.12
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|320159427|ref|YP_004172651.1| | 8.00E-22 | putative DNA glycosylase [Anaerolinea thermophila UNI-1] |
| nr | gi|743764052|ref|XP_010912229.1| | 0 | PREDICTED: LOW QUALITY PROTEIN: transcriptional activator DEMETER-like [Elaeis guineensis] |
| Swissprot | tr|Q8LK56|DME_ARATH | 0 | Transcriptional activator DEMETER |
| trEMBL | tr|J3MVU3|J3MVU3_ORYBR | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:OB09G11210.1} |
| TAIR | AT3G10010 | 5.00E-162 | demeter-like 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000153 | 725206 | 779445 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004951
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF15628.5 | RRM_DME | 1594 | 1694 | 1.30E-53 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006281 | Biological Process | DNA repair |
| GO:0006284 | Biological Process | base-excision repair |
| GO:0051539 | Molecular Function | 4 iron, 4 sulfur cluster binding |
| GO:0003824 | Molecular Function | catalytic activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 54.110 |
| SRR2545915 | Juvenile tuber | 91.950 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 21.470 |
| SRR5643514 | five period of Gastrodia elata | 12.940 | |
| SRR5643515 | five period of Gastrodia elata | 34.450 | |
| SRR5643524 | five period of Gastrodia elata | 18.630 | |
| SRR5643525 | five period of Gastrodia elata | 12.640 | |
| SRR5643528 | five period of Gastrodia elata | 13.030 | |
| SRR5643658 | five period of Gastrodia elata | 23.700 | |
| SRR5643659 | five period of Gastrodia elata | 70.880 | |
| SRR5643660 | five period of Gastrodia elata | 71.110 | |
| SRR5643661 | five period of Gastrodia elata | 49.590 | |
| SRR5643662 | five period of Gastrodia elata | 37.900 | |
| SRR5643663 | five period of Gastrodia elata | 62.180 | |
| SRR5643664 | five period of Gastrodia elata | 53.410 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 36.000 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 19.990 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 32.600 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 44.080 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 50.300 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 57.130 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 50.380 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 47.030 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 21.930 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 34.030 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 14.390 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 14.390 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 32.46 |
| Juven | Juvenile tuber | 22.22 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 12.88 | |
| Mother_Juven | Mother tuber of Juvenile | 10.42 |