Detail information of GWHGAAEX004954/evm.TU.scaffold_157.18


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|262194905|ref|YP_003266114.1|7.00E-89actin/actin family protein [Haliangium ochraceum DSM 14365]
KOGKOG06760Actin and related proteins
nrgi|565368260|ref|XP_006350765.1|0PREDICTED: actin-like [Solanum tuberosum]
Swissprottr|Q10DV7|ACT1_ORYSJ0Actin-1
trEMBLtr|M1CZ41|M1CZ41_SOLTU0Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400077954}
TAIRAT3G121100actin-11

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000015310154671092926+
Transcript Sequence

Network for GWHGAAEX004954

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00022.18Actin2536126.40E-142
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms21.150
SRR2545915Juvenile tuber15.460
SRP108465SRR5643513five period of Gastrodia elata18.100
SRR5643514five period of Gastrodia elata16.360
SRR5643515five period of Gastrodia elata16.230
SRR5643524five period of Gastrodia elata16.580
SRR5643525five period of Gastrodia elata20.020
SRR5643528five period of Gastrodia elata34.950
SRR5643658five period of Gastrodia elata19.630
SRR5643659five period of Gastrodia elata19.150
SRR5643660five period of Gastrodia elata18.130
SRR5643661five period of Gastrodia elata17.880
SRR5643662five period of Gastrodia elata15.590
SRR5643663five period of Gastrodia elata17.660
SRR5643664five period of Gastrodia elata15.970
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_119.390
SRR6049655Rhizomagastrodiae_C368-T10_good_114.580
SRR6049656Rhizomagastrodiae_C368-T07_good_119.040
SRR6049657Rhizomagastrodiae_C368-T07_good_118.660
SRR6049658Rhizomagastrodiae_C368-T04_good_120.110
SRR6049659Rhizomagastrodiae_C368-T04_good_120.960
SRR6049660Rhizomagastrodiae_C368-T01_good_118.720
SRR6049661Rhizomagastrodiae_C368-T04_good_119.360
SRR6049662Rhizomagastrodiae_C368-T01_good_123.380
SRR6049663Rhizomagastrodiae_C368-T01_good_120.280
SRR6049664Rhizomagastrodiae_C368-T10_good_121.770
SRR6049665Rhizomagastrodiae_C368-T10_good_121.770
SRP279888GastroGastrodia elata tuber 14.68
JuvenJuvenile tuber14.51
Mother_GastroMother tuber of Gastrodia elata 31.88
Mother_JuvenMother tuber of Juvenile 39.62