Gene detail

Detail information of GWHGAAEX004957/evm.TU.scaffold_157.23

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672121627\|ref\|XP_008784115.1\|	0	PREDICTED: transcription factor LHW-like [Phoenix dactylifera]
Swissprot	tr\|Q9XIN0\|LHW_ARATH	7.00E-93	Transcription factor LHW
trEMBL	tr\|Q5N9E6\|Q5N9E6_ORYSJ	1.00E-159	cDNA clone:J013129B18, full insert sequence {ECO:0000313\|EMBL:BAG90720.1}
TAIR	AT2G27230	2.00E-92	transcription factor-related

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000153	1300703	1334453	+

Transcript Sequence
>GWHTAAEX004957 ATGGGGCTTGAGCTAAGAGAGGCGCTGAGGCGCCTCTGTGTCGATATTGGGTGGTCGTATGCAGTTTTTTGGAGGATGATCGGCTCACCAACTCCCAAGCATTTAGTCTGGGAAGATGGACATTGGTGTGGGAAGTCACAGCTTTCACGGCATGATGAGGTGAGTTCTTATATGAACTTATCAGCTGAATTGGGAGCTCAAGGAGATGGAAACATAGACGAGCTGGTTAGGAAGACAATGGTGCCTCAGGTCCATCTTATAGGAGATGGGATAATTGGACATGCTGCCTCCATAGGATATCATCAGTGGATTGTTAGGGAAGCTAATTGTGACAGAGAATCTATATTATTGCATTTGGCAGAATTGAAAAACCAGTTTGTGTTGGGGATTCAGACAATTGTTATTTTACCCTTAATTCCATATGGTGTCTTACAATTTGGTTCTACTATGAGGGTAATGGAGAATAATCTGTTCGTAAACCATGTAAGGGCTTCCTTTATGCAGCTGCTATGCGAGCCAGTATCTTTTGGTGTCATTCATGAGTCTTTGGGTCGGAGTAATCTGCAATACGCATCCAAATGTTCTGCTGTTTCTAGTAATCAAAATTCAAATGATTGCAGCAGCATAGACAAATCATTCTCTATGATATGCAATCATCAACTTTCCATTTCTTCCGCTTCAAGATCATTGAACCATATTTCTGCTCCTTTATCTACACGATGCCATGAAAATCAGTTAAAATTAGATGCACAAAGGCTGTCAACCATGAAAATCGTGGGTTCATCACTGCTTTCTACCGAGCCAAGCAACCCTATGATTTATCCATCCGGAAACTCTCTTTCTCATCTGAATAATAGACTTCAAAGTGGACTGGTGGAGGCTCAGGTAATATCCAATAGGGATACGATGCTTGCTTCAAGTAGAGCGACTCACAGTACTGACTGTTTGTATTTCTTGGAAGAGAACTTATCATCTGCCTATGGTAGCAGAACTCAGGAGCCTGCTGTTAGCATCAAGGCTTCATTGGAAGGCATGGTTGGAGGGCTTGACACTTGTTCTTTGCATCCAAAAACTGAATACTTGGATTATGAAAGAGTTTTTTCATCTCAAGCTGGTTCTAAGGAAAACTTTGAGAGCTCATTTTGCGATGCACTTGTCTTCAATTCACTAAATGTGAGTCAGGACATCAATGCTTCAGATATAAATCTAGGAATATCAAGGAATTCTCTTGCTAACAATTCCTCTATCAACAAATGCAATGGAAATCCAGGTCCTGGCAATCTTAAACAAAAGCATGATTTTCCTGTTTCTTTTGGTCTTACATCCAGATCTTGTTATCGTAATGTTCAAGAAACCAAACCTGACAGTTGCAACTTTGAAAAATTGCAGAACCGAAGGATTGAAATTGATTCCAGCATCCTTCATTTGCCTAATGAAAATTCTTCACCTTTCATTCCACTTACTTCTTCAGGGGATGATCTGTTTGATGTGTTGGGTTTTTACGACAGTTTGGGCAAAGGCTCATCTATTGATCAGAATTTGTCTGTAGATGACACTTCCTGCAACACACAATCAAACCTCCTTCCTATATTTTACTCTCTCAATGATAATTGGCCTGAGATATATTCGGAGTCCAATACCAATGACCAATTGTTGGATGCAATTGTTTCAAAGATCAATCCCGGTGCCAGATCGAGTTTGAATGAGAATATTTCTTGCACAACATCAGCTACCAAAGTTAATGGGTCGCCAAAATACTGCGGTACTTCTAGTAATGATGGTTCTGCTTCTTCAGGGAAGAAACGTGGAGAGTACGCTTCTCCATCAATTCTAACTTGCAACTCAGAGGTGGCAACTTCAACATCTATTAGGTCAGCTGATAGTATGCATGAAACTGATAGGTCAGGCTGTTATAAATCCCAAATCAGTTTATGGGTTGAAAGTGGGCAAAACACAAAGTCTGATTCACATATTAAGAGGGCTGATGAAGCAATCAAGATTAATCGCAAGAGATCAAGACCCGGAGATTCCCCACGACCAAGGCCAAAAGATCGTCAATTAATAATGGACCGAGTGAAGGAATTACGTGAAATTGTGCCCAACGGAGCAAAGTGTAGTATCGATGCTTTATTGGAAAAAACCATCAAGCACATGCTTTTCTTGCAAAGTGTGGCCAAGCATGCGGATAATTTGAAAGATTCGGGAGAGCCAAAGATCATATGTAAGGATGGAGGCATCTTGTTGAAAGATAATTTTCAAGGCGGTGCAACATGGGCATTTGAAGTTGGTTCTCAGCCCATCACATGCCCTATCATAGTTGAGGATCTTAATCCGCCCCGTGAAATGCTTGTGGAGATGCTTTGCGAGGAGCGGGGTGTTTTCTTGGAAATTGCTGATTTGATCAGAGGATTGGGCTTAACAATCTTGAAGGGGGTAATGGAGGCTCGAAAAAGCAAAATATGGGCCCGCTTTGTAGTGGAGGCAAACAGAGACGTAACTAGAATGGAGATTTTTCTATCGCTTGTCCGCTCTTTGGAACCAACGTTTGGCTGCAGCAGTGCGGCTCAGTATCCCGCACATAACAGCAGTCTGCCCCATAAGATATTCAACCCATCTTGTCGTGTTCCTGTTGCAGGCGCTTCTGATCCTCTTCACTGA

Network for GWHGAAEX004957

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14215.5	bHLH-MYC_N	5	166	1.00E-27

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046983	Molecular Function	protein dimerization activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	40.630
SRP064423	SRR2545915	Juvenile tuber	39.680
SRP108465	SRR5643513	five period of Gastrodia elata	17.710
	SRR5643514	five period of Gastrodia elata	20.060
	SRR5643515	five period of Gastrodia elata	16.730
	SRR5643524	five period of Gastrodia elata	18.030
	SRR5643525	five period of Gastrodia elata	16.920
	SRR5643528	five period of Gastrodia elata	16.660
	SRR5643658	five period of Gastrodia elata	22.290
	SRR5643659	five period of Gastrodia elata	23.890
	SRR5643660	five period of Gastrodia elata	26.910
	SRR5643661	five period of Gastrodia elata	23.310
	SRR5643662	five period of Gastrodia elata	18.300
	SRR5643663	five period of Gastrodia elata	23.430
	SRR5643664	five period of Gastrodia elata	23.290
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	21.090
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	17.080
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	20.110
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	25.340
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	24.000
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	20.390
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	22.820
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	22.690
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	26.220
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	22.310
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	17.430
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	17.430
SRP279888	Gastro	Gastrodia elata tuber	21.09
	Juven	Juvenile tuber	63.31
	Mother_Gastro	Mother tuber of Gastrodia elata	32.96
	Mother_Juven	Mother tuber of Juvenile	77.86