Detail information of GWHGAAEX004962/evm.TU.scaffold_158.2
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|118576566|ref|YP_876309.1| | 2.00E-12 | ribosomal protein S26 [Cenarchaeum symbiosum A] |
| KOG | KOG1768 | 6.00E-64 | 40s ribosomal protein S26 |
| nr | gi|672137001|ref|XP_008792210.1| | 2.61E-70 | PREDICTED: 40S ribosomal protein S26 [Phoenix dactylifera] |
| Swissprot | tr|P49206|RS261_ARATH | 2.00E-64 | 40S ribosomal protein S26-1 |
| trEMBL | tr|C6SXI6|C6SXI6_SOYBN | 9.00E-70 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G40660.1} |
| TAIR | AT2G40590 | 6.00E-64 | Ribosomal protein S26e family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000170 | 25433 | 45506 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004962
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01283.18 | Ribosomal_S26e | 1 | 105 | 5.70E-54 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02976 | RP-S26e, RPS26 | Ribosome | map03010 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006412 | Biological Process | translation |
| GO:0003735 | Molecular Function | structural constituent of ribosome |
| GO:0005840 | Cellular Component | ribosome |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 42.250 |
| SRR2545915 | Juvenile tuber | 50.880 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 85.520 |
| SRR5643514 | five period of Gastrodia elata | 95.640 | |
| SRR5643515 | five period of Gastrodia elata | 86.530 | |
| SRR5643524 | five period of Gastrodia elata | 97.340 | |
| SRR5643525 | five period of Gastrodia elata | 94.660 | |
| SRR5643528 | five period of Gastrodia elata | 112.280 | |
| SRR5643658 | five period of Gastrodia elata | 85.280 | |
| SRR5643659 | five period of Gastrodia elata | 73.580 | |
| SRR5643660 | five period of Gastrodia elata | 70.180 | |
| SRR5643661 | five period of Gastrodia elata | 79.270 | |
| SRR5643662 | five period of Gastrodia elata | 61.860 | |
| SRR5643663 | five period of Gastrodia elata | 75.570 | |
| SRR5643664 | five period of Gastrodia elata | 58.350 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 91.100 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 51.940 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 115.000 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 73.760 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 97.640 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 76.210 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 92.730 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 92.890 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 145.830 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 128.870 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 134.210 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 134.210 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 124.98 |
| Juven | Juvenile tuber | 77.06 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 89.33 | |
| Mother_Juven | Mother tuber of Juvenile | 61.44 |