Gene detail

Detail information of GWHGAAEX004963/evm.TU.scaffold_158.3

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743806833\|ref\|XP_010927836.1\|	0	PREDICTED: uncharacterized protein LOC105049787 [Elaeis guineensis]
trEMBL	tr\|K3YHX4\|K3YHX4_SETIT	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Si013843m}
TAIR	AT1G10280	6.00E-152	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000170	49923	57374	-

Transcript Sequence
>GWHTAAEX004963 ATTTTGAGGTCGATGATTTGGATTTACGTTGTATCGCTCATTATTCTCATATGACGTTTGGAGAATTTGAGGGTTTACTCAAATAAATCTTGAAACCAAAGAGGTCGGTCTAAGAGATTACAGAGGTTCAATGATCTATATTACTTATTGCTCTAGGATTGAAAGGTTTTTTTGATCAATGTTGATTTACAATTTGGCCTACAAAATAGTTTAACTTTGAATTCAAAGAGAAATGAATGTGTCAAGGAGTAAGGTGGAAGATGAGCATGGGGATTTCTACCCATTCTTATCTAGGAATAATTGGTTGTTAACATTGTTAAGGATAGTTTGGGGTTTGGTAATATTCATGGGAGCAGCAATTTTGGTTTTGTCTATAAGTTCTCGATATAATCAATACTTGAAGCCACCAAAAACTGATCTTTTATATCCGACTAAGATGTACACTACAAATTGTGATAGTGAGAAGTTAAGCATAAAGAGTTTTGTTCATCCAAAGCATATATTGCATGATTTGACGGATGAAGAGCTTTTCTGGAAGGCTACTTTGGTGTCAAAAATGGAAGGATATCCATATAAGAGAGTGCCCAAGGTTGCATTTATGTTCCTTACACGTGGTCCTCTTCCATTTTTGCCCCTTTGGGATAGGTTTTTTAGAGGGCATGAACTCTTCTACTCTATTTATGTGCATTCAGTTCCAAATTACAAATTCAATGTTTCTACAACTTCAGCTTTCTATGGACGCCAAATTCCGAGTGAGGAAGTTTCATGGGGATCTATTTCACTTATTGATTCAGAAAAACGACTTTTGGCTAATGCTTTATTGGATTTCTCCAATGAACGTTTTGTTCTTCTGTCAGAGAGCTGCATCCCTATATATGATTTGCCTACAATCTACAAATATCTTATCAATTCAAAGCATAGTTTTGTTGAGTCTTATGATGAAAATTCTCCTCGCGGACGTGGTCGTTATAGCCGTTACATGTACCCTATTATAAAGCGCTACCAGTGGAGGAAGGGGTCTCAATGGCTTGAGCTTAATCGTGAGTTGGCCGTAAATATAGTTGCAGATTACAATTACTATGTCATCTTCAGCAGATATTGCAAGCCCTCATGCTACCCAGATGAGCATTACATCCCGACATACTTGAACATGTTCCATGGTGCGTTGACTGCAAACCGGAGTGTGACTTGGGTCGATTGGTCAAGAGATGGACCTCACCCTGCTACATATGGCAATGAAAACATCACAATCAAATTCATCGAGTTAATTAGAAGTAATGGAACCAAATGTACATACAACTCGGAGCCAACTTCTATTTGCTATCTCTTTGCCAGAAAGTTTGCTCCTAACGCTTTAGAGCTTCTACTTAACATCTCTTCAAAAGTCATGAACTTTTGAAATTCAGATGTCTGGGCATTAAACTTGCTTCGAAGCCCTCCAATGCTGCCCTTCTCACTGTTTTTGTGAGGCTGCACGATTTCTTCACTCATGAGAAAAATGCC

Network for GWHGAAEX004963

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02485.20	Branch	120	346	7.40E-79

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008375	Molecular Function	acetylglucosaminyltransferase activity
GO:0016020	Cellular Component	membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.000
SRP064423	SRR2545915	Juvenile tuber	0.000
SRP108465	SRR5643513	five period of Gastrodia elata	0.270
	SRR5643514	five period of Gastrodia elata	0.080
	SRR5643515	five period of Gastrodia elata	0.100
	SRR5643524	five period of Gastrodia elata	0.180
	SRR5643525	five period of Gastrodia elata	1.010
	SRR5643528	five period of Gastrodia elata	0.770
	SRR5643658	five period of Gastrodia elata	0.500
	SRR5643659	five period of Gastrodia elata	0.310
	SRR5643660	five period of Gastrodia elata	0.150
	SRR5643661	five period of Gastrodia elata	0.150
	SRR5643662	five period of Gastrodia elata	0.240
	SRR5643663	five period of Gastrodia elata	0.340
	SRR5643664	five period of Gastrodia elata	0.180
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	0.050
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	0.000
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	0.000
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.000
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.000
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.000
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	0.000
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.000
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	0.000
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.000
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	0.090
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	0.090
SRP279888	Gastro	Gastrodia elata tuber	0.02
	Juven	Juvenile tuber	0.12
	Mother_Gastro	Mother tuber of Gastrodia elata	0.10
	Mother_Juven	Mother tuber of Juvenile	0.32