Gene detail

Detail information of GWHGAAEX004965/evm.TU.scaffold_158.7

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG3215	2.00E-90	Uncharacterized conserved protein
nr	gi\|743824620\|ref\|XP_010932826.1\|	3.16E-111	PREDICTED: THO complex subunit 7A-like [Elaeis guineensis]
Swissprot	tr\|Q9M8T6\|THO7B_ARATH	5.00E-91	THO complex subunit 7B
trEMBL	tr\|F2D6G3\|F2D6G3_HORVD	4.00E-109	Predicted protein {ECO:0000313\|EMBL:BAJ90684.1}
TAIR	AT3G02950	2.00E-90	Tho complex subunit 7/Mft1p

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000170	102884	111870	-

Transcript Sequence
>GWHTAAEX004965 TCAAACTGCCCAGATAGGAACGGCTAACCCTAAAATCGCAAGCATTCGACCTCTTTCTAGAATCGCAGCTCTCGAATGCTCCTCCATCTTCTCGCTCCTCACACGCATCGCCACTCCATCCTTCAACTCGCCATCTTCTTCTTCTAGCAAGCACTGCCGATCCCCTCTCCAAACCTGCGTCCCTCCTTCTCGACGACGGTCCCTCCAGCTCCTCCTCACTCGCCAACCTAAACCTACGCCGATCCTTCTTTCTTTAAAGAGCTTGCCGATTCCTCCATCGTCTGCGGCAAATTCAAATAATGAAAGATAAGGTGATCAAGAAGATCAAGGTTTCAACCTCCAATCTTTCGCAAATTTTTTCAATACCCGATCAGATTGCAACGAGACCTTTCAGGCTGAGTGTGATTTGTAGTTTTTGATCTGAAGCCTTTGATCTGCAGGATTGAAACCATTTGAAAAGTTATTGTAGGAAGATCTATATTAGATGTCTGCAAAAGTAAGAAAAGCTGTTGGGCGAGAAGAAATGAATGCAAACTATGCCTTTGGCTCACTTGAGGATGACACAATAATCAAACACAGGCTTCTAACCCGCACCACAACCACAAGGGGTGAACCGCCATTGAAGAAGATCCAGAAGAAGTTCATGACATTCATGCTCGAAGTTGAAAAGAATATAGACAACTATGGCGACTGTGAGAAACTGTACAAAAACTTGCTACAAGAGATGGGTACGTTTGAGATGCCGCTGGTCAAAAGCAAGGCTGTGGTTGATGCCAACATTCGGGAGAAGGAGAGCTTCAATGAGCTGCAAGAAGAAATTGTTGCACAAATCATGCAGGCCCGGACTGATATAGAGGATCTGAAGCAGCAGCTCAAGGAGAGCAAGATTGACAGGCAGCACAAAGAGGAATGTGAGGCAATAAGGAAACTGATCGCATTGCAGCCACCCAGATCTGAAACCCAGCAGACCATTTCTAATATTGAAAAAGAAATTGCAGCATTGGAGGCTGAGAATGCTGCAGGTGCGAGATTGCTTGATCTTAGGAAGAAACAGTTCTCTCTTCTCCTCCATGTGGTGGATGAACTGCAGAGCACTGTTGAGGGTGAACAGAGGAGTTTCTTAGCAGATGAGCTGATGAGGAGTACGGTGGAAGATCAAAAGATTAACAGCACCGAAGATGCCAGCGGCCGACCATCTGAAGCTGCTGCTATGTCTGTAGATTGACTGGCTTGCTAGATCTAAATAGCTTGTTTTAAATTTTTTATAAAATGTTTGAACCTTATTTTATAAATTAAAAAATAAATATTGCTGCTTATGTATTATAGCTCTATTTTCCCTGACCTAAATAGCCTGCATTTTCAGCATTACATGATCATCAAGATATTTGATCCTTTTTTTTATTATAAATAGAAGAAATAGAGCATAATTCCTCTAAAAAAAGTGTGATCTTCAA

Network for GWHGAAEX004965

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05615.12	THOC7	26	163	1.50E-27

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13176	THOC7	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name
GO:0006397	Biological Process	mRNA processing
GO:0000445	Cellular Component	THO complex part of transcription export complex

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	65.710
SRP064423	SRR2545915	Juvenile tuber	158.700
SRP108465	SRR5643513	five period of Gastrodia elata	64.470
	SRR5643514	five period of Gastrodia elata	56.930
	SRR5643515	five period of Gastrodia elata	61.690
	SRR5643524	five period of Gastrodia elata	67.190
	SRR5643525	five period of Gastrodia elata	59.750
	SRR5643528	five period of Gastrodia elata	62.900
	SRR5643658	five period of Gastrodia elata	63.730
	SRR5643659	five period of Gastrodia elata	70.770
	SRR5643660	five period of Gastrodia elata	75.890
	SRR5643661	five period of Gastrodia elata	68.960
	SRR5643662	five period of Gastrodia elata	75.860
	SRR5643663	five period of Gastrodia elata	70.300
	SRR5643664	five period of Gastrodia elata	78.730
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	53.890
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	77.360
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	57.600
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	51.220
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	50.020
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	49.700
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	45.390
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	48.540
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	42.930
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	47.890
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	59.760
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	59.760
SRP279888	Gastro	Gastrodia elata tuber	63.02
	Juven	Juvenile tuber	57.22
	Mother_Gastro	Mother tuber of Gastrodia elata	67.15
	Mother_Juven	Mother tuber of Juvenile	65.78