Gene detail

Detail information of GWHGAAEX004968/evm.TU.scaffold_158.10

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|645247076\|ref\|XP_008229662.1\|	2.04E-164	PREDICTED: scarecrow-like protein 23 [Prunus mume]
Swissprot	tr\|Q9FHZ1\|SCL23_ARATH	1.00E-144	Scarecrow-like protein 23
trEMBL	tr\|M5WRZ7\|M5WRZ7_PRUPE	1.00E-164	Uncharacterized protein {ECO:0000313\|EMBL:EMJ16582.1}
TAIR	AT5G41920	4.00E-144	GRAS family transcription factor

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000170	130475	132534	+

Transcript Sequence
>GWHTAAEX004968 CTACGCTTAAAAATGAAAACTTGTAACAAATTTATTAACATAATATTAATATAAAATGGTTACAAATAAAAACATAATTATAAAAAATTAGAAGCGAACGTCGGAACGTGCAGTGTTTGTGTGAGAGATCCAAAAATTGTTGTTTCGCTTTCTTCCCACCTTCCAAATCATTTTCTCCGGTCCCCAAGAAAGAAGAAAGAAACATAAAAAAGAAAAAAAAAAAGAGGGGGCAATCGAAATCGTGATATTCAATCGAACGATCCCAATCCTGGAACCTCGAATCCCTCCTCCCGGTGGTGCTGCTGCTCCTGCGGGTGCGGGTGCGGGCGGAGGGATGATGGTGCAGAGGCTACTTCCGCAGTCTCCGATAAAGCGGACTTCGAAGAAGCGGTCATCGTCGTCAGCGTCGTCGTCGGATGAGGGGGCGCCGGCTGCAAAGCAGGCTCACGCGGAGGGGGAGGGCGAAGGGGCGGAGCTGCGGCTGCTGCGGCTGCTTCTGCAATGTGCGGAGTGGGTGGCGGTGGACAATCTGGGGGAGGCACTGAGGGTGCTGCCGGAAATCAGCTGGCTGTCGTCACCGTTGGGGTCCTCGCCTGAGCGAGTGGCGGCGTACTTCTCCGAGGCGCTGCGGGCTCGGATCGTGTCTTCGCTGCTGTGCTGCTACTCGCCGCTGCCGGCCAAAGCGGTGGCGCAGCGCATCCCTCGGTGCTTCCACCTGCTGAACAGCCTGACCCCGCTGATCAAGTTCTCCCACTTCACATCCAACCAGGCCATCTTCGAGTCTCTGCGCCCGCTGTCGCGCGTGCACATACTGGACCTGGACATCATGCAGGGCCTGCAGTGGCCGGGCCTCTTCCACATCCTCGCCTCCCGCCCCCGCCCCCTTCGCTCCGTCCGCATCACCGGCGTGGGCCCCGACGCCACCGTCCTCGACGCCACCGGCCGCCGTCTCGCCGACTTCGCCGCCTCCCTCGGCCTTCCCTTCCGCTTCACCCCCTTCGAGGGCAAGGTCGCCGACCTCGCGCCCCCCTTCCTCCGATCCGACGGCGACGACGAGCCCACCGTAGTCCACTGGACCCAGCATTGCCTCTACGACGTCACCGGCTCCGACCTCGCTGCATCACGCCTCCTCTCCTCCCTCCGCCCTCGCCTGGTCACGGTCGTCGAGCAGGACCTCGGCCACGGCGCCGGCTTCCTGGGCCGCTTTGTGGAGGCCCTCCATTACTACTCCGCCATCTTCGACGCCATCGGCGACGCCGCCCCCTCACCGGATGACAGGTGGGAGGTTGAGCAAGCCGTCCTGGCCGGCGAGATCCGCAACATCGTGGCCGTCGGCGGCCCCAAGAGGACCGGTGAGGTCAGGGTCCAGAGCTGGGCCCACGAGCTCCCCAGGGCCGGCTTCCGCCCAGTCTCCCTCGCCGGCAGCCCGGCGGCCCAGGCCGCTCTCCTCCTCGGGATGGTCCCCTGGAAGGGCTACACCCTCGTTCAGGATGCGGGCAGGCTCAAATTGGGCTGGAAGGATTTGTCTCTCCTCACCGCCTCCGCCTGGACCCCCCTCGATGCTCCCCCGGATGACTGCGAAGCCGACTCCTGACTCCCCAAATCATATTTCTGCTTTTCTTTTTCATGTATGTAGGTAGCTAGTTAGCTCTTTCTCTCTTTTTCTTATTGCTTGCTTGCTCTATTCAAAGAGGAAAGGGGGAACATTTAATTTAGTTATCATTGCCATGTAATCAATCAAGCTGTCCTGAGTTCGGCAACTCAATTACTGCTTACTGCTTACTGCTTATTGACAAGCACGCAATTACAGCGCATGCTTCTGCAATTGTCTCTATGTTTTTTTTCTTTAATGGCAGCGCTTTGGTTTTAGCATTTATGATCTTCATCATGTTAAAGCCGCCTCTGTTTCCGAACCAATGCCGATTTGTATTATATTTTGTCAATGATTCTGGCGGTGGTTGAATTATTGATGTAGAATTTGAGCGTAGCTTCTCGGAAGTTTATCGGGATGGAGAGTGCAACAACATTTTTGTCATCTAAACTGTTAGTTAATTAGCAGA

Network for GWHGAAEX004968

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03514.13	GRAS	51	406	5.30E-95

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	GRAS

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	2.930
SRP064423	SRR2545915	Juvenile tuber	4.760
SRP108465	SRR5643513	five period of Gastrodia elata	29.800
	SRR5643514	five period of Gastrodia elata	34.370
	SRR5643515	five period of Gastrodia elata	28.100
	SRR5643524	five period of Gastrodia elata	43.050
	SRR5643525	five period of Gastrodia elata	3.940
	SRR5643528	five period of Gastrodia elata	3.230
	SRR5643658	five period of Gastrodia elata	1.790
	SRR5643659	five period of Gastrodia elata	20.220
	SRR5643660	five period of Gastrodia elata	13.880
	SRR5643661	five period of Gastrodia elata	17.670
	SRR5643662	five period of Gastrodia elata	10.160
	SRR5643663	five period of Gastrodia elata	8.000
	SRR5643664	five period of Gastrodia elata	19.180
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	42.930
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	29.820
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	44.820
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	31.690
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	36.130
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	37.040
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	43.580
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	30.930
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	42.080
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	57.810
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	41.190
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	41.190
SRP279888	Gastro	Gastrodia elata tuber	3.68
	Juven	Juvenile tuber	7.09
	Mother_Gastro	Mother tuber of Gastrodia elata	18.86
	Mother_Juven	Mother tuber of Juvenile	6.60