Gene detail

Detail information of GWHGAAEX004971/evm.TU.scaffold_158.12

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743758787\|ref\|XP_010928795.1\|	1.45E-66	PREDICTED: uncharacterized protein LOC105050464 [Elaeis guineensis]
trEMBL	tr\|M0TDH9\|M0TDH9_MUSAM	4.00E-62	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr7P00390_001}
TAIR	AT2G34920	1.00E-30	RING/U-box superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000170	210942	217008	+

Transcript Sequence
>GWHTAAEX004971 AAGGCCACTATTTAAGTTTTTGGAGCTTCAAAAGTAAAACGATCCTGCCGTTGGAGCTCTGTCTCTCTCGTCAATTTTGCCAACGAATCCGCGCAGCGCTATCTCTAAAAAACGGGGCGCTCCCGTTCGGAGAAGCGCAGCCGTTTCTTCTTCCATGGCTTCCTCGGTGGCCCGAATGCCAAACGACGGCTGGCACAGCCACCATGAATCCGAGGGGTGCCCTCTCTCCGGCGGAAGCGCATCGGCCCTGATTCAGATATGGAGGGGACGAGAGGTCGATGGCAATGCGGCTAGAGGAGTCGGGGAGATGGTGAGGATTCTGAGACTCAACAGCTCGCCTTGGCCGGACACGGATCAGCGCCTCAGCCCCACTTCGCCGCCGACGAATTGCCGGACCGCCGGCAGCGGAAGAAAAGTGGTGAGGCTCCGAGGGAGGAAGGAGATGGAGGGTTTGGTTTTGCGGATGAAGAAGGATCGCCTCAGAGAAATCGCCGATCTTGCTAAGAAGCAGAGAGTCTCTCGATTCCCCTTTCGTGGCAGGATTCAGTCATTGGTTAGGCTCAGATCTCTGCGACGAGAAGTCTGCACCATCAAAGAACAACAATGGTCCCAAAGATATGATGCAAATCATAAAGATTCACATGGCAGATTTTCGTCTAATGCATCTTTTAGGGATATGACTAAAGACATAAGTCAGCAAATCGAGATCGAGGGACATACAGTTGGTGTGCAAGTTCAATCACCAGATTCACGAGGTCCAAATTTTGATCAATTTGCCAATTTTACTGAAATTGAAGATACTCAATACCCAGAATCAGTTTCCACAATAGAACTGGAAAGCTCACCATCAGAAGCCTTGTTCATAACACCAACCAGTGAAGAAGATTTGCATGGATGTCAGAAGGCTAATTGTTTAAGCGGTGAGAGAATTTCATGGGAAAATTCTAATGATTTGAAACAGTCTAAAGATTCATCTGTCTTAAGAGGCTGTCAAGAAGAGATGTTAATGGAAATGGAGGATGTTAAAGCTTTCACTGAAGAGCAACAACCCATTTACACAAATAGTAGCTGGTTATCAGAACACCCTAATTCATGGAGAGGACAGGAGGACATTAGAAAAGCATTCAATCATGATTTTCCCACAGCTTTCAACAATAATGTGGAGATCCAAGAACTGCTTGAAAGGAGAACTGTATCAAATTTTCTAGCTAGTGATTTCTCTCACAAATTGAACAAGATGATTATGTCATTTATACAAAAAAAAGGTGCACATTATGGTAATGAGAGTGGAAAAGATGAATGTCATGAGCAGACAATATCTACACAACCATTTGAAGCCTATTCTGATCAAGATACTTCTACATCATCATTAGTACAATTATCTCAAGAGTCACACAGCCAGGAGAGATGTCCGAGTTGTTCTTTCGATCAAAATCCATCTATGAGAGATCAAGATGTGAACTCTATAAATGGTTTGAGAGATGAACTTACTCAAATACGAGGTGAACTTTTAGAGCTAAGAACGATGGTGGAGAGTTGCCTGGAATGGAAACCAAAGCTAGAATGCTCTATCAAAAAGGAGCTTTCTTCTTCTATTGATCAATTAGTTGAAAGAGAGAAATCTGCACTTATTACCAAATGGATGCCGGGATATAATGACACATGTTGCATTTGCTATGAAGCCCAAATCAACACACTATTATATAGGTACATAATTTTATATTTATTTCACTTGGAGAATTTTTTTTATATGTTAGTTAAATGTCCACAATGTCCTTATAGATGTGGCCACATGTGTGCTTGTTTCAAGTGTTCTCAAGGTTTACACCTTAGCAACAGCAGCTGCCCAATTTGTCATTCTACAATCATTGATGTTGTTCAAGCATATCCAAACAGCTAAAGCTTCGGGGTTGATAGATTAGTTGACGATATCAGCTAAAGCTTTGAGGTTTGATAGATTTAGTTGTGATCGCTTTTGTTTTGAAACAATCAGACAATGAATATATCATTTTATAACAAGTATTTTGGCTAACAAAGTTATTATTAGTCATACACAAAGTAGTATGGATGTAGAATGTTATAGTGAAAATTCTTGTGATGATATATTTCATATCTGTTTTGTTTAAGAGCTCAAAAAATATTGGTATGATGATGTTCTTATTTATCATTATCTTGAAAACTTTTAAAATATAGCAAAAGGTTCAAC

Network for GWHGAAEX004971

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	2.130
SRP064423	SRR2545915	Juvenile tuber	2.710
SRP108465	SRR5643513	five period of Gastrodia elata	4.270
	SRR5643514	five period of Gastrodia elata	3.260
	SRR5643515	five period of Gastrodia elata	3.190
	SRR5643524	five period of Gastrodia elata	3.340
	SRR5643525	five period of Gastrodia elata	0.340
	SRR5643528	five period of Gastrodia elata	0.280
	SRR5643658	five period of Gastrodia elata	0.270
	SRR5643659	five period of Gastrodia elata	0.490
	SRR5643660	five period of Gastrodia elata	0.850
	SRR5643661	five period of Gastrodia elata	0.700
	SRR5643662	five period of Gastrodia elata	0.560
	SRR5643663	five period of Gastrodia elata	0.390
	SRR5643664	five period of Gastrodia elata	0.730
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	8.900
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	13.350
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	6.370
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	6.060
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	5.900
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	5.510
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	4.370
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	3.810
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	6.460
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	4.640
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	15.560
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	15.560
SRP279888	Gastro	Gastrodia elata tuber	1.44
	Juven	Juvenile tuber	4.19
	Mother_Gastro	Mother tuber of Gastrodia elata	1.94
	Mother_Juven	Mother tuber of Juvenile	3.89