Gene detail

Detail information of GWHGAAEX004973/evm.TU.scaffold_158.14

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|186681693\|ref\|YP_001864889.1\|	5.00E-47	hypothetical protein Npun_F1222 [Nostoc punctiforme PCC 73102]
KOG	KOG0265	0	U5 snRNP-specific protein-like factor and related proteins
nr	gi\|695008024\|ref\|XP_009390584.1\|	0	PREDICTED: U5 small nuclear ribonucleoprotein 40 kDa protein [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q3Y8L7\|DAW1_CHLRE	2.00E-36	Dynein assembly factor with WDR repeat domains 1
trEMBL	tr\|F6HB26\|F6HB26_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB49395.1}
TAIR	AT2G43770	0	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000170	239197	246562	-

Transcript Sequence
>GWHTAAEX004973 GCAGCCGGTTCTTAAAGAAAAATCGAGAGCTGATCTAAATCCCTAATTAAGTTCCCGAGTTCGCATGTGCACCTTTTTTTATCATAATAGTTGAAGCCGGTATTGGGTCTTGGCTTCTCGCATTTCCTCGACGGCTCGACTTCTTTCTGTCGTCTTTGTTCTGGTGTCTCGATTTCTCCTCGGCTGCAGTAGTGCTCCACATCTCGGGCGAAACCTCCAAGGTTTTCATTTAAAAAATGCTTTCTGTGCCAAACCAAGGTGACTATGTGCTAACTGCCCCAAGGCCCAGGCCGGGGTCTGAGTTGGTTATTCATGCACCTTTTTTTGCTGGCAAGCATCGAACCTCTAGCCTAGAATCACCCATTATGCTCTTAACTGGACATCAGAGTGCCATTTACACTATGAACTTCAACCCAGCTGGGACTATTGTCGCCTCAGGTTCCCATGACAAAGGCATCTTTTTATGGCACGTACATGGCGATTGCAAGAACTTCATGGTCCTGCATGGTCACAAAAATGCTGTGCTTGATGTTCAATGGACTTCTGATGGGTCTCAAATAATCTCTGCAAGCCCTGACAAGACTCTTCGAGCTTGGGATGTTGAAACTGGAAAACAGGTAAAGAAGATGGTAGAACACTCCTCGTCTGTTAACTCCTGCTGTCCAGCTCGTCGAGGACCACCACTGGTCGTCAGCGGGTCAGATGATGGCACAGCGAAGTTATGGGATCTCCGGCAGCGTGGTGCTGTGCAAACCTTCCCAGATAAGTACCAGATCACTGCAGTTAGCTTTTCTGATGCATCTGACAAGATCTTCTCTGGTGGTCTTGACAATGATGTAAAGGTGTGGGATTTGCGGAGAAATGAGGTTACCATGACTCTCCAAGGACATGGTGACATGATCACTGGCATGCAGTTGAGCCCTGATGGCTCCTATCTATTAACAAACGGAATGGATTGTACTCTGAGGATATGGGATATGAGGCCATATGCACCCCAAAATAGATGTGTTAAAATATTTTCTGGGCATCAACACAACTTTGAGAAGAATCTTCTCAAGTGTGCGTGGTCACCGGATGGGAGCAAGGTTACTTCTGGGAGCTCTGATCGAATGGTGTACATCTGGGACACCACATCAAGGAGGATCCTGTACAAGCTTCCTGGTCATAATGGGTCAGTGAATGAAACTGATTTCCACCCCACTGAGCCTATTATTGGCTCCTGCAGCAGTGACAAGCAGATTTATTTGGGGGAGATTTGAATAGGATATTACCATCAAATTGAAATATAGCTCTTATATTGTAATTTTTTATTCCAAACTTTTGGAGGTAACTTTGAGAGTATATTTCCTTGAAGCTTTGATATTAAGAGTTTGTTATTTGTAGCAATCGTACTTGCCATTGTCTGATCATTTGCCTTATATGTGTTTTCATCTTTTTACTTGAAAATTGTTCAAGTAGCTCATGTTTTTAGTTACTGCAATATGAATCAGAAGTTAGCTCATGTTTTCATCTTTTT

Network for GWHGAAEX004973

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.31	WD40	42	77	0.00016
PF00400.31	WD40	84	121	0.00029
PF00400.31	WD40	126	164	0.00051
PF00400.31	WD40	180	205	0.004
PF00400.31	WD40	212	247	3.20E-07
PF00400.31	WD40	256	297	3.00E-07

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
K12857	SNRNP40, PRP8BP	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	37.860
SRP064423	SRR2545915	Juvenile tuber	40.300
SRP108465	SRR5643513	five period of Gastrodia elata	28.310
	SRR5643514	five period of Gastrodia elata	32.270
	SRR5643515	five period of Gastrodia elata	31.440
	SRR5643524	five period of Gastrodia elata	28.630
	SRR5643525	five period of Gastrodia elata	39.800
	SRR5643528	five period of Gastrodia elata	43.650
	SRR5643658	five period of Gastrodia elata	37.310
	SRR5643659	five period of Gastrodia elata	43.070
	SRR5643660	five period of Gastrodia elata	42.080
	SRR5643661	five period of Gastrodia elata	40.840
	SRR5643662	five period of Gastrodia elata	45.620
	SRR5643663	five period of Gastrodia elata	37.630
	SRR5643664	five period of Gastrodia elata	39.470
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	28.620
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	35.670
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	24.600
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	29.120
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	21.060
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	20.830
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	24.780
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	20.710
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	29.030
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	23.300
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	35.170
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	35.170
SRP279888	Gastro	Gastrodia elata tuber	32.73
	Juven	Juvenile tuber	37.39
	Mother_Gastro	Mother tuber of Gastrodia elata	33.07
	Mother_Juven	Mother tuber of Juvenile	27.90