Gene detail

Detail information of GWHGAAEX004976/evm.TU.scaffold_158.17

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1917	Membrane-associated hematopoietic protein
nr	gi\|743762233\|ref\|XP_010907091.1\|	PREDICTED: probable protein NAP1 [Elaeis guineensis]
Swissprot	tr\|Q6ZBH9\|NCKP1_ORYSJ	Probable protein NAP1
trEMBL	tr\|M0RGN1\|M0RGN1_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr10P09050_001}
TAIR	AT2G35110	transcription activators

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000170	348581	433386	-

Transcript Sequence
>GWHTAAEX004976 TATGAACATTACACTCATCCCACTCAGTTTCGCTCGTCTTGCGAACCAAGCGGCCCTTTCGACTGATAGCCACCGTTTCGAATCGACGGCAGGCGGGCTTTCGGCTTCGCCTCTTCTTCTCCTCCCTGCCGCAGTGTTCCTTTTCTTTCTCTCTTAAGTTTTATTCGCTCCAGTGTCCTTCTGCGGCTCTGCTTACTGTTAGTAGGCACGACTCCCAGATCTCGATCCCTTCTTCAGCGCCTTTTGATTTACTTGTTTCTAGCTGCTTTTGTGCTATTGAATGCAAGCCGCTACTGCATTTTTCTTCACAACTATCTTTGCTGTTGGATTTTCTTTTCATGCTTTATTGGGAGGAAATTTGTTGAAGTCTTATTCAAATGGCAAAACCAAAATCTCTTTCTTCCAATCAAGGGTCATCTCCCATGTTTGCAAAATCCAAGGACTGGGACAATGTATCCAGATGGTCTGAGTACCTTCATCCTGAAGAAGCTTTTGTCTCACCTTCTACAAGTTGGAAGCATGTTGGTTCTGAAGGACATTCAAATTATGGAGTTTTTCATAAAGCCCTTCAAATGGAGTTGGTAGCTCAACTTTCCAGAGTTGCAGAGGGTTTAATGTGCAAGATGTATAGGCTAAACAATATTTTGGGCAAACCTGATTTAGCATCTCACATATTTTCTGATTCTTTCTGGAAAGCTGGTGTTTTTCCCAACCAGCCTCGAATATGTGTACATCTGTCAAAAAAATTTCCAGAGCATCCTAACAAATTGCAGTTGGAGCGTGTTGATAAACTTGGTTTGGATAATTTGAATGACAATGCAGAAGTATATGTTCTGAACCTGGAACCTTGGATCACGCTTCTGCTTGACTTGATGGCATTTCGGGAGCAAGTGTTGCGTCTTATTTTGGAATTAAGCAGCACAGTCATAACATTGCTTCCCCATCAAAATTCTCTTATCTTACATGCTTTTATGGACCTCTTTTGCTCCTTTGTTCGTGTGAATCTATTTTCTGATAAGATACCAAGAAAAATGATTCTGCAAGTTTATGACCTCCTGTACATTATAACTAGGGGTGGACGAGATTGTGAATTCTACCATCGATTGGTTCAATTTGTTGATTCATATGACCCCCCTGTAAAAGGGTTGCAAGAGGATCTTAATTTTGTCAGCCCACGTATTGGAGAAGTGCTTGAGGCAGTAGGGCCGATTATCTTTCTTTCCACTGATACTAAAAAGTTGCGCAATGAAGGGTTCTTAAGTCCTTTTCATCCACGTTATCCCGATATACTTACAAATTCTGCTCATCCTATGAGAGCCCAGGATCTTGCAAATGTTACAGCATATCGTGAATGGGTTCTGTTGGGTTATCTTGTTTGCCCAGACGAGCTACTTCGGGTTACCAGTATTGACGTAGCTATGGTTGCACTAAAAGAAAATTTAATAGTCACATTATTTAGAGATGAGTATGTTCTACTGCACGAGGTCTATTTACTTTATGTTCTACCAAAAGTACTTGAGTCAAAAAAAATGGCTAAATCTGGACGTTCAAAGCAAAAAGAAGCAGACCTGGAATATAATGTTGCAAAACAAGTTGAAAAAATGATAAGTGAGGTGCATGAGCAAGCTATTCTTTACTGTGATGGCATTCATCGTGAAAGGAGAATACTACTTAAACAAGAGATTGCAAGAATGATTTTGTTCTTTTCTGATCAACCCAGCTTGCTTGCCCCAAATATTCAGATGGTATTTTCTGCACTAGCATTAGCTCAATGTGAGGTAATTTGGTATTTTCAGCACTTTGGGATTGCATCTTCAAAGTATAAAGTTTCTCGGGTGCCTAATGACATTGATGCAGGTGATCCAACTATTGGGTTTTTGTTCGATGGAATGGACAAACTTTGCTCATTAGTTCATAAATATAATGCTGCAATAAAGGGTTATGCATTATCGTACTTATCATCATCTGCTGGAAGAATTCGATTTTTACTTGGTACTCCTGGGATGGTTGCCCTGGACCTTGATTTCACTTTGAAGGATCTCTTTCAGCAAATTGTTCATTGCCTGGAAAACGTGCCAAAACCTCAAGGAGAAAGTATCTCTGCCGTTATGTGTGATCTGTCTGAGTTGCGCAAGCACTGGTTATCAGTCTTAATGATTGTTACATCCTCACGTTCATCAATAAACATAAGACACTTGGAAAAAGCCACTGTCTCAACTGGAAAGGAAGGTTTGCTATCAGAAGGGAACTCTGCTTACAATTGGTCCAGATGTATAGACGAGCTCATGTCTCAACTTTCAAAACATGGGAGCCTAAAATATTTGTACTTCTATCACCATCATCTAACTGCTGTTTTTAGAAATACCATGTTTGGCCCAGAAGGGCGGCCACATCACTGCTGTGCATGGCTTGGTATAGCTAGCAGTTTTCCTGAGTGTGCTTCTGCAATTATTACAGAGGAGCTGAACAAAATAGGCAGAGATGCTATTTCGTACGTGGAATCACTTATTGAGTCGATTATGGGTGGATTGGAAGGCCTGATAAATATACTTGACTCTGAAGGTGGATTTGGAGCCTTAGAAATGCAGCTCAATCCAGAGCAAGCAGCCCTTCGAATGAATGCAATCAAAGTCTCTAGCCATTCAGCTAAGTCTCCCAAAGGGTTTTTGGGCTTACAGCTACCGGGGCATGAGAGTCGTCCAGAAAGCATTAATTCAGTTAAAATGCTGGAGGCTGCCATGCAAAGATTAACTAGTTTATGCTCTGTTCTAAATGACATGGAACCCGTGTGTGTTCTGAACCATGTCTTTGTACTCCGTGAGTACATGAGAGATTGCATTTTGGGCAATTTCAGAAGAAGGCTGCTCACAGTTCTGAGAACCGACAGCAGCCTTCAGCGTCCATCCATTGTGGAGTCCCTTCTTTGCAGACACATCCGTATCATCCATATAGTGGAGCAGCACCTGAGCATGGACCTTTCGGAAGGAGTTCGGCAAGTCCTGTTGTCGGAGACTTTCAGCGCATCAATCCTTGACCCCCACACCTCCCTACAAAGTGGGTCGGCCATAGAAATGATCTCCAGCTGGTACATGGATATCATCGTGAAGGACTCCAACAGTGCCGGAGTAACGTTTGCACCCTCCCGCAGCTGCTTCAAGAGCTTGAAGCTCGTCGGCGAATATTCTGCAGATGCGTACACGGATGCGAAGGAACTCAAATCGTTGATCCGCATGTTCGGTGGCTACGGATTTGACCGGTTAGATCGGCTGGCAAGAGAGCATGTCGCCGCTCTGTTGAGCTGTATCGATACTGGCCTTCAGGAAAACCGCGAGGCTCTCGAGGCCATGGCCGGGAGTCTGAGCTCCGGCGACCCGGTCAAGAGAGAGGAGAATTTGAGGCATGTCCTCGACTTGGAAACCCTGGTGGGCTTCTGCATTCAGGCAGGGCAGGCAATAGCCTTCTGGAGGCTTCTCGCGGATGCTACCGGAGCGGTTCTCGAGGAGCACGCCCCTCTAATCTTCTCTCTGTTTAGCGGGGCCTCGAAGCACTTGCCTGATAACGAGATCCCTGAAAAGGATGAAATCAGCAGATTGAGAAAGGTGGCGAGCAGCATTGGGGCCGGGAATGATGTGGACTGGATTCATTCGATTATGAAGGAATGCGGCGCCGCCTGCGATAGTTCTTGGAGCTTGCTTCCATACCTCTGCGCTTCTTTCATGGCATCCAATATGTGGGGTGCTGCTATATTTGATGCATGCACCGGAGGATTTAGCAATAACATGCATTGTTTGGCGAGGTGCATCAATGCTGTCATAGGCGGCAGTGAGCTGGTGAGGATGGAAAGGAAGGAGCAGCAGTGGCGAAGTGAGTCTCGCTCTGGCGGACACCCTCATGAATACCTCGAGACGGATCTCCGACGCTCTTTGGCGGAGGCCAGCATAAAGTCTGCTGTTCAGGTCTTCGTTAAATGCTCGGTAACAATTATCCTGGAACCGTGGAACCAAACACCAAGCAGCAGCAGGTCACATCTGGCGCCAAAATTAATATTCTTAGACCAGCTTTGTTGCCTTTCACCGTATCTGCCCCGAAGCACCCTAGAGGCGCACGTGCCTTACGCCATTCTCCGTTCGGCATACTCGGAGCGGTATGGAAGCTCCCGCCCTGCCCTGCCTCCGCTTGAACTGCCGCTCCGGCATCTGAGGCAGTCTCCCCTAATCTTGCTGAACCGCGGTGACTCAACTCTCGTCTCTGCCACCGCCCAGGGTGAGGTGAACACGGGACGATCCGGTCCATTGGATTATGGCTCGAACCGGAAGGCGAGGTTTGGGAGCTCCACCGGTGCTGATCAGGGGTCGAGCCCGCTGGCTATGTTTATGGCCTCCAGGTCCGGCCCACTGCGCTACAAATAGATGCAGCTTGGCATTTACAAACTGCAATGTTAATTTGATTGAATTTACAGAGTTCTTCTTAATCACTAAGAGTGCTGTATAATGTCCTAATATATAATTGGAAATTTTGTTGTAATGTATAATTATTAAAGCTTTTTTGTATTTAAGCTATGATGCCCTAACCAACGAATAAGAATGAAATGTTAAAACTATTTATTATTATATCACTTTCGACAATGAATTACAGCACCAGAACTTAATGATTGTTAATGTGTAAAAGAAAGGTAGAGAAATAACAATTATTACATGAGAACCTCAAGTTATAATAATTGCAATCAAATTTATATAGCTAAAACACTCAAAGTGCTTGGCTACTTGCCTTATGGGCGGCAAAAGTTTCTTAAAGTTTCTTAGAAGCCATCTACATGAATCCGCATAGAAAAAATATGTTCAACCAATTGCATGTCATCAGAATCCACATGGCTAGTAATGGCAGCATCTGCAATCAGATCCGTGGAGGCATAATAAGCATTCCCCAAATCTGCAAGAGAAAGTGGTTCAGATACCACCCACCAATTCACATAGAATCTGTAGCAGAACGAAGCTGCTATGGTAAAAGCTTCAATAAATTTAC

Network for GWHGAAEX004976

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF09735.8	Nckap1	73	1257	0

Protein Sequence

>GWHPAAEX004976
MAKPKSLSSNQGSSPMFAKSKDWDNVSRWSEYLHPEEAFVSPSTSWKHVGSEGHSNYGVFHKALQMELVAQLSRVAEGLMCKMYRLNNILGKPDLASHIFSDSFWKAGVFPNQPRICVHLSKKFPEHPNKLQLERVDKLGLDNLNDNAEVYVLNLEPWITLLLDLMAFREQVLRLILELSSTVITLLPHQNSLILHAFMDLFCSFVRVNLFSDKIPRKMILQVYDLLYIITRGGRDCEFYHRLVQFVDSYDPPVKGLQEDLNFVSPRIGEVLEAVGPIIFLSTDTKKLRNEGFLSPFHPRYPDILTNSAHPMRAQDLANVTAYREWVLLGYLVCPDELLRVTSIDVAMVALKENLIVTLFRDEYVLLHEVYLLYVLPKVLESKKMAKSGRSKQKEADLEYNVAKQVEKMISEVHEQAILYCDGIHRERRILLKQEIARMILFFSDQPSLLAPNIQMVFSALALAQCEVIWYFQHFGIASSKYKVSRVPNDIDAGDPTIGFLFDGMDKLCSLVHKYNAAIKGYALSYLSSSAGRIRFLLGTPGMVALDLDFTLKDLFQQIVHCLENVPKPQGESISAVMCDLSELRKHWLSVLMIVTSSRSSINIRHLEKATVSTGKEGLLSEGNSAYNWSRCIDELMSQLSKHGSLKYLYFYHHHLTAVFRNTMFGPEGRPHHCCAWLGIASSFPECASAIITEELNKIGRDAISYVESLIESIMGGLEGLINILDSEGGFGALEMQLNPEQAALRMNAIKVSSHSAKSPKGFLGLQLPGHESRPESINSVKMLEAAMQRLTSLCSVLNDMEPVCVLNHVFVLREYMRDCILGNFRRRLLTVLRTDSSLQRPSIVESLLCRHIRIIHIVEQHLSMDLSEGVRQVLLSETFSASILDPHTSLQSGSAIEMISSWYMDIIVKDSNSAGVTFAPSRSCFKSLKLVGEYSADAYTDAKELKSLIRMFGGYGFDRLDRLAREHVAALLSCIDTGLQENREALEAMAGSLSSGDPVKREENLRHVLDLETLVGFCIQAGQAIAFWRLLADATGAVLEEHAPLIFSLFSGASKHLPDNEIPEKDEISRLRKVASSIGAGNDVDWIHSIMKECGAACDSSWSLLPYLCASFMASNMWGAAIFDACTGGFSNNMHCLARCINAVIGGSELVRMERKEQQWRSESRSGGHPHEYLETDLRRSLAEASIKSAVQVFVKCSVTIILEPWNQTPSSSRSHLAPKLIFLDQLCCLSPYLPRSTLEAHVPYAILRSAYSERYGSSRPALPPLELPLRHLRQSPLILLNRGDSTLVSATAQGEVNTGRSGPLDYGSNRKARFGSSTGADQGSSPLAMFMASRSGPLRYK

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05750	NCKAP1, NAP125	Regulation of actin cytoskeleton	map04810

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	7.720
SRP064423	SRR2545915	Juvenile tuber	11.940
SRP108465	SRR5643513	five period of Gastrodia elata	8.100
	SRR5643514	five period of Gastrodia elata	8.470
	SRR5643515	five period of Gastrodia elata	7.210
	SRR5643524	five period of Gastrodia elata	8.650
	SRR5643525	five period of Gastrodia elata	6.050
	SRR5643528	five period of Gastrodia elata	3.560
	SRR5643658	five period of Gastrodia elata	5.910
	SRR5643659	five period of Gastrodia elata	8.550
	SRR5643660	five period of Gastrodia elata	8.300
	SRR5643661	five period of Gastrodia elata	6.810
	SRR5643662	five period of Gastrodia elata	6.050
	SRR5643663	five period of Gastrodia elata	8.050
	SRR5643664	five period of Gastrodia elata	8.330
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	11.280
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	6.870
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	10.830
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	11.220
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	10.520
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	10.110
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	9.960
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	10.590
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	11.880
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	10.800
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	9.590
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	9.590
SRP279888	Gastro	Gastrodia elata tuber	12.91
	Juven	Juvenile tuber	12.82
	Mother_Gastro	Mother tuber of Gastrodia elata	8.32
	Mother_Juven	Mother tuber of Juvenile	9.38