Gene detail

Detail information of GWHGAAEX004977/evm.TU.scaffold_158.20

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2993	Cytoplasm to vacuole targeting protein
nr	gi\|743823777\|ref\|XP_010932621.1\|	PREDICTED: uncharacterized protein LOC105053226 isoform X1 [Elaeis guineensis]
trEMBL	tr\|M0RGW8\|M0RGW8_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr10P09920_001}
TAIR	AT3G19190	autophagy 2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000170	467436	532204	-

Transcript Sequence
>GWHTAAEX004977 ATGTTCCGGTGGGCTTTTGCGGAGGCGCTATTAACGCGCTGGGCGATCAAGCGCCTATGCAAGTTTCTCCTGAAGAAAAAACTGGGGGATTTCATCTTAGGCGAAATTGATCTCGACCAGCTTGAGGTACAGCTCACCCGCGGCACCATACAGCTCTCCGACGTCGCCGTTAATGTCGATTACATTAACCAAAAGCTATCTGGGGCTATGGTGATGCTAAAAGAAGGTTCTATTGCTTCTTTGTCAATTACAGTACCATGGAAGCTGCAAAATTGTCAGATAGAACTTGAAGAACTTGAACTTGTGCTTGCTCCGTTCGCTGGAAGTAAGATTCAGGTGCCTGATTTCTATTCAGAGTTAATTAGTGGTGATAAGCATATGAACCATGTCCCTGACAAGAATGAACAAGAAACTAGCCAAGAGAACTGTGGATCTGCATCTCTTGATATCCATGAAGGAGTTAAGATGGTTGCTAAAATTGTGAAATGGCTTCTCACTAGTTTTCATATTAGGATTAAAAACCTTATAGTTGTATTTGATCCTAGTTTAGAGGTGAATGATGATAAATTTCCAGATAACAAATCATTGGTTTTTCGAATTGCGGAAGCAGAATTTGGAACTAATCTTTCAGAAGATACTGAAAACAAAACTCATATTTTGAAGTCTGATTGTATTCTTGGAACAGCCAAACTAACAAATTTTGTGAAGTTTGATGGTGCACTGATTGAGGTTCTTACTATGACTGACATTGATAAGAGTCATCATTCTTCAGATTGTTCAGAAACCACAAGTAACCGTTGCAATTCAAGTAGCTTACCATCAGGCAGTGTCACAACAATTTTGACTGGTAGAGGTAGAGGGATCTCAGGTAGAATGAACATAAGCATTCCTTGGAAAAATGGATCTCTTGACATTCATAAAGTTGATGCTGTTATCTGCTTTGATCCTATTGAATTAAGACTGCAACCGAGCACCATTGAGTGGATTATTTTTGTATGGGAATCTCTCAAATATGCAGGCACAGCTGTAAGGTCTAGTGCTCATTGTACAGTGATCGATTCGGGTTGCTCTAATTCTAGATTGTTTCGCTACTCGCCTGTGAGAAACTTAACAATTTTAGGTGCTGATGTTGCAAAACCTAGCTTCAAGAAAAACTCTGTGGAGTCGCACTCTGACAACAATGGTGAGATTTTTCCTGAGGCACTACTTCCTCAAACACATGTTATTCAGGACTGGGTGCCACTATCATTCAAAGAAGACCAAGCAGAATTAGAACAAGACTATGGAGCAAGCATTGATCAATTTTTTGAATGCTTTGATGGGTTGCGGAGCTCTCAGGCAAATTCTGAAACTAGCGTGGTGTGGAACTGGCCTTACTCAGTTTTCAATGCAATTAATGTTGCCTCTAATCTTGCTACTGGTTCGGATCATATACCTACAGAATATGTTGAAACATGTTTAAGAGTAACTGTCACAGGGATCTCTCTTTTCCTTTATTTTCATGATAAGGAAGATACTATATATGATCCGTTGCTGGGTGGTGACAGGGATACCAATGAGTCGTTCCGATGGAATCATTTAGACACTGCAACAAGCTGCATACAAGATCCTTTGAGCGGTCTTTCATCTATGGATGCTAGTCAGTCAACCACAGCTGAACCTGATTCAACTGGTTTAAAGATTCATCATCTGGAAGCTAAGTGTCAAGATATATTTATTGAATTTCAGCAGATCAGTTCACAAATGAAAGATTGCCAAGTATCAATCAAGCATTTCAAAATTGACGAGTATTATGATCATAAAAGCTGTGTCAGGATGTTTGGCTTCTTTGATAACAACTCGTGTGATCTGATGCTTATAAACACAACTTTGAAGCAAAAAGTTCTCGATGCTCTTACTCCCTTTCCGGTTTTTAACCATGCATATGATTCAGAAAAGTCTCTTTTGCACAATGCGGGGTTAATCTATGAAAATTATTCAAATGCACAGCTTACTAAGGTTGGACTCATGGAATCTCTTGGAGATTTTAACTTGCATTGCACTATTAAGCTGGCTGATATGAATCAAACTCCAGTATCTTCAACTTCTTTCTCTCTGCATTTGCCACCATGTGTTCTGTGGTTTCACTTTCATCTTGCAGATTCACTTTTGAATCTCTTCAAAAATGTTGAAGCCTGTTTTAAAAAGGGTAGAGAGAACAGAGATCTATCTGATGAATCTTCTTATGGAAAGAAACTTGTCTGCCCCCATGGTTTAAAAAATGGTGTTTCTTCCATTAAAACTGTTCCTACAGGGGATAGTGTGAAAGGAAACTTTGTCTTTTCCCATTTAAGAATCATAATCTGCTTTCCTTTGCAAAGTTTGGAAGACTTTGATCATTTATACCTTATGGATAAGTTCATTATTCTTGAGCATTGTCCTTTTGTTGAAGAGCTTTCGCATGATTCTTCCTTTCCATTACATCAACTCAGTGCACCAAATGGCAGTTCCTGCACCTCTACTTTTTCATTTCATTTTGAACTAGGGACCTTTGACCTATACCTTGCTAATACTATTAACAAAGATTCTACTGCTGATCAATCTATACCATTACAAGTTAAAGATGTCTCTGGCGTAAAACTTTTTACGTTGATCAGCAGAACAGGTGATAAACATTCTGGAATTAGTATGATTTTGCAGAACGGCCCTGTAACCGGTCATTGGATGGCCAGTAGAGCTTGGAGCATGGCATCAGCACATGATCATAGAAGTAGGAATAAAGTCACACGAGAAGGTTGTGAGTTTTCTTCTGGCAATGTAATAGATGCTTTTGATGTGACTAGTTCTGATATTCGTCAAGAATTGATTTATAGCTCTAAATTTTTCATACATTTAAGCTTTTCTGTTATTCGGCTAAATCTTCAGAGTCATAATTATGAACAATTGAATAACCTTTTAGATATTGTCACGCATGGCTTCTCTAAGGTAGGATCTTCTAAAATCAGTGTCTTTGAGGAGGATCAGCCACTATGTAATCATGATGCATGTCAAGCAACTGTTGTTATGAATTGTGATATGTTGGATCTAAGCATTGTGCTCGATGAGGTGCCTGATTGTAGTCAATTGGCTCAAAAAGAGGTATTGGGCTCGTGGAATTGCTTTCGGCTCATAGTTGAGAAATTTGAGATAATGTCTGCCTTAAATATTGGTGGAATTAGCGGAACAAACTTTTTCAGGCTCATTCATGGAGAGGGTAAATTATGTGGCTCCATATTCAATAATGATGGTAGTGTTTTGGGCCAAACCCATGACATTGTCTTAATTTCTTGCACAAACTCTACTAGCAGGCGGGGAAGAGGTGATGGTACCAATGTGTTGTCTTTTAGTTCTGCTGGAACTACAATTACTTACATCTGTAATCCACAGTTATCCCGCAGTTATACATCTATACTTGTTCATTGTGGAACCATTGTTGCACATGGGGGCCGCCTAGATTGGATTAGCCATATATGCTCATTCTTTAGCTTGCCTTTTGAAAATGAATCCTCAGGCAGTGATGCAAACCGGGTCAAGTCTGCAGATTCTAGGACTTATGAGGCATCTTTTATTCTTGATTTGGTGGATGTAGCTTTATGTTATGAGCCATACTTGAAACATTCAGCTCTAAACGGCGCATATGCTAAGTGTGATGAAAATCATGAGCTTAATCAAGGAACATCTGAGCAACTTGTGGGCTATCTTTTAGCTGCAGCTTCAGTCAGCATCTCTAGTCATCCCTTATCAAACTCTGCAATTATAGATTACACTATCCGGTTACAGGATTTGGGACTTCTTATTTGCATGCCATCAGGTATGAACTTTCGCTGTGGAAGTTATGATGTTAGTTATCTGCGAAAATCTGGTTATGCTAAAGTTGCTTCATGTAGTCTTTTAGTGGCTGTTCTCAGAATTCGTGGCTTACAGTGGGAAGTTGAATGTTCAGACTCACACATTATATTTGATACTTGTAATGATACAACTCATGGACTGTTTCGCTTGATTGCTCAGCTGCAGCAGCTATATGCACCTGATATGGAAGATGCTCTTGTACATTTGCAATCTAGGTGGATTAGTGTCCAAGAAAGTCAGAACACAAATGGATCTAATGAAACATCAGATATTTCCAATTCTTCTAGTAGTTTGGATGCTGGTATGAAGTTTCCTATAAATGATGACAGTTCCCTGTCTATCCGGCTATTGGATGGGGTAATTGATAATGCTTTTTACATAACCAAGGGGTCTGATAACTTGGGAGTGGAGAACTCTAGCTCGACAAGTAACTCTGAATTTGATAATATTGATACTTCATTTGAAAAAGGGAGATTCCTTCCCCAACTTATTGAAACCCACTGTTTTCCTGAGCTGATAGCATCATCACTAACAACAAAAGGAAGTCCTTCAGAAGTTCAGAATTTGAAGTTTGATTTACCCGACCGAGCAAAAGTTGAACGTGGCAAGGGCGGATGGTACAAGGATGGTTATCTGATGATAGTAGATAACCATATTCCAAATTCTGTACTGCCTCTTTCTGATCGTCATCAAGAGAAAAATGTGTTTGTAACTGTTGATTCGGATGCTTCTGCTCGCTGTTGTGAAAAAGGAAAGATACTTCTCAAGAACATAGATGTTAGATGGCATATGTTTGCTGGATCGGATTGGTCTAAGCAAAAGATAAATTCAGCTGGAAAAGATACAAATTCTTCCATGGAGCTCAGTTTTTCAGGGTTAAATATTCAATTGTCAATACACCCTGATGGTGAGGTCGATGTATCTAAACTTTCAATTCAGATTCGAGATTTTCATGTCTTTGATAGAAGTACAAACGCTCCATGGAAGATGGTGATTGGGCAATATAACTCCAAGGATCATCCAAGAGAATCTTATGCTAAAGCATTCAAGTTAGATTTGGAAACAGTAAGGCCTGATCCAAGAATATCTCTTGAAGATTATAGGCTATATGTTGAATTTCTTCCAGTACGGTTGCATTTAGATCAAAGCCAGATAAATTTTCTTATCAACTTTTTTGGCAATGGTTCATCTGTTGAAGGAACACTTAGCTCAACTAAGGATGCAGATTATATAAATGAGAAAAAAAACAAAGCCTATGGAAGTCAGCCAATTGAAGAAGAGGCTTTACTTCCGTTCTTTCAGAAATGTGTTGTGAAGCCTCTGGTTGTACGTGTTGACTATGTTCCTCGTCACATGGATCTGACATCACTTAGTCGTGGAAATTATATTGAACTTCTAAACCTGGTTTCTTGGAAGGGAATAGATCTGAATCTTAAACAAGTATGTGCTGTAGGCATTTATGGCTGGGCCAGTGTGTGTGAAGCAGTGGTCGGGCAATGGTTGGAAGATATTTCTCACAACCAGGTTCACAAACTTTTGAAAGGCCTTGCTCCAGTTAGATCATTGGTTTCTGTTGCTTCTGGCACTACTAAATTAGTTACCTTACCTGTTAAAAGTTACAGAAGAGATGGGAAGCTCCTCAAGGGAATGCAAAGAGGTGCAATAGCATTTGTTAGAAGCATATCTCTTGAAGCTGTTGGATTGGGGGTTCATTTGGCATCTGGTGTACATGAGATACTGCTTCAAACTGAGTTTATTCTTAGAACTGTTCCACAAAGTTCACCGGTACTATCTGAGAAGGGTAGAATAATAAAAACAGCAAACTCTAACCAACCTGAAGATGCACAAGAAGGCATTCGTCAAGCGTACGAGAGTCTAAGTGAAGGCTTCAGCAGAAGCGCTTCCGCAATACTGGGAACTCCCATGAAAGAGTACAGGCGAGGCATGGGCGCCGGATCAGCTTTAGCAACCGCAGTCCGCGGGACACCTGCTGCAGCCATTGCTCCTGTCACCGCTTCCGCTCATGCGGTCCACCGTGCTCTCCTCGGAGTTCGAAACAGCCTTGATCCTGAGCACAAAAAAGAATCCATTACCAAGTATCTGGGTCCATCCCAGTTGTAG

Network for GWHGAAEX004977

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12624.6	Chorein_N	17	105	1.70E-11
PF13329.5	ATG2_CAD	1286	1350	7.80E-06
PF09333.10	ATG_C	1898	1989	2.10E-24

Protein Sequence

>GWHPAAEX004977
MFRWAFAEALLTRWAIKRLCKFLLKKKLGDFILGEIDLDQLEVQLTRGTIQLSDVAVNVDYINQKLSGAMVMLKEGSIASLSITVPWKLQNCQIELEELELVLAPFAGSKIQVPDFYSELISGDKHMNHVPDKNEQETSQENCGSASLDIHEGVKMVAKIVKWLLTSFHIRIKNLIVVFDPSLEVNDDKFPDNKSLVFRIAEAEFGTNLSEDTENKTHILKSDCILGTAKLTNFVKFDGALIEVLTMTDIDKSHHSSDCSETTSNRCNSSSLPSGSVTTILTGRGRGISGRMNISIPWKNGSLDIHKVDAVICFDPIELRLQPSTIEWIIFVWESLKYAGTAVRSSAHCTVIDSGCSNSRLFRYSPVRNLTILGADVAKPSFKKNSVESHSDNNGEIFPEALLPQTHVIQDWVPLSFKEDQAELEQDYGASIDQFFECFDGLRSSQANSETSVVWNWPYSVFNAINVASNLATGSDHIPTEYVETCLRVTVTGISLFLYFHDKEDTIYDPLLGGDRDTNESFRWNHLDTATSCIQDPLSGLSSMDASQSTTAEPDSTGLKIHHLEAKCQDIFIEFQQISSQMKDCQVSIKHFKIDEYYDHKSCVRMFGFFDNNSCDLMLINTTLKQKVLDALTPFPVFNHAYDSEKSLLHNAGLIYENYSNAQLTKVGLMESLGDFNLHCTIKLADMNQTPVSSTSFSLHLPPCVLWFHFHLADSLLNLFKNVEACFKKGRENRDLSDESSYGKKLVCPHGLKNGVSSIKTVPTGDSVKGNFVFSHLRIIICFPLQSLEDFDHLYLMDKFIILEHCPFVEELSHDSSFPLHQLSAPNGSSCTSTFSFHFELGTFDLYLANTINKDSTADQSIPLQVKDVSGVKLFTLISRTGDKHSGISMILQNGPVTGHWMASRAWSMASAHDHRSRNKVTREGCEFSSGNVIDAFDVTSSDIRQELIYSSKFFIHLSFSVIRLNLQSHNYEQLNNLLDIVTHGFSKVGSSKISVFEEDQPLCNHDACQATVVMNCDMLDLSIVLDEVPDCSQLAQKEVLGSWNCFRLIVEKFEIMSALNIGGISGTNFFRLIHGEGKLCGSIFNNDGSVLGQTHDIVLISCTNSTSRRGRGDGTNVLSFSSAGTTITYICNPQLSRSYTSILVHCGTIVAHGGRLDWISHICSFFSLPFENESSGSDANRVKSADSRTYEASFILDLVDVALCYEPYLKHSALNGAYAKCDENHELNQGTSEQLVGYLLAAASVSISSHPLSNSAIIDYTIRLQDLGLLICMPSGMNFRCGSYDVSYLRKSGYAKVASCSLLVAVLRIRGLQWEVECSDSHIIFDTCNDTTHGLFRLIAQLQQLYAPDMEDALVHLQSRWISVQESQNTNGSNETSDISNSSSSLDAGMKFPINDDSSLSIRLLDGVIDNAFYITKGSDNLGVENSSSTSNSEFDNIDTSFEKGRFLPQLIETHCFPELIASSLTTKGSPSEVQNLKFDLPDRAKVERGKGGWYKDGYLMIVDNHIPNSVLPLSDRHQEKNVFVTVDSDASARCCEKGKILLKNIDVRWHMFAGSDWSKQKINSAGKDTNSSMELSFSGLNIQLSIHPDGEVDVSKLSIQIRDFHVFDRSTNAPWKMVIGQYNSKDHPRESYAKAFKLDLETVRPDPRISLEDYRLYVEFLPVRLHLDQSQINFLINFFGNGSSVEGTLSSTKDADYINEKKNKAYGSQPIEEEALLPFFQKCVVKPLVVRVDYVPRHMDLTSLSRGNYIELLNLVSWKGIDLNLKQVCAVGIYGWASVCEAVVGQWLEDISHNQVHKLLKGLAPVRSLVSVASGTTKLVTLPVKSYRRDGKLLKGMQRGAIAFVRSISLEAVGLGVHLASGVHEILLQTEFILRTVPQSSPVLSEKGRIIKTANSNQPEDAQEGIRQAYESLSEGFSRSASAILGTPMKEYRRGMGAGSALATAVRGTPAAAIAPVTASAHAVHRALLGVRNSLDPEHKKESITKYLGPSQL

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K17906	ATG2	Autophagy - animal	map04140
		Autophagy - yeast	map04138
		Autophagy - other	map04136

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	20.850
SRP064423	SRR2545915	Juvenile tuber	15.690
SRP108465	SRR5643513	five period of Gastrodia elata	8.290
	SRR5643514	five period of Gastrodia elata	10.150
	SRR5643515	five period of Gastrodia elata	9.930
	SRR5643524	five period of Gastrodia elata	10.100
	SRR5643525	five period of Gastrodia elata	14.680
	SRR5643528	five period of Gastrodia elata	14.860
	SRR5643658	five period of Gastrodia elata	14.130
	SRR5643659	five period of Gastrodia elata	7.770
	SRR5643660	five period of Gastrodia elata	8.010
	SRR5643661	five period of Gastrodia elata	7.730
	SRR5643662	five period of Gastrodia elata	7.690
	SRR5643663	five period of Gastrodia elata	7.430
	SRR5643664	five period of Gastrodia elata	7.550
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	10.010
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	7.420
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	11.280
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	10.550
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	14.730
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	16.340
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	13.250
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	15.550
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	11.150
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	12.420
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	10.530
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	10.530
SRP279888	Gastro	Gastrodia elata tuber	12.83
	Juven	Juvenile tuber	12.88
	Mother_Gastro	Mother tuber of Gastrodia elata	21.13
	Mother_Juven	Mother tuber of Juvenile	25.37