Gene detail

Detail information of GWHGAAEX004981/evm.TU.scaffold_158.23

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0311	8.00E-78	Predicted E3 ubiquitin ligase
nr	gi\|743758829\|ref\|XP_010929012.1\|	1.54E-158	PREDICTED: putative E3 ubiquitin-protein ligase RING1a [Elaeis guineensis]
Swissprot	tr\|Q9FKW0\|RNG1A_ARATH	4.00E-93	Putative E3 ubiquitin-protein ligase RING1a
trEMBL	tr\|M0TDH1\|M0TDH1_MUSAM	3.00E-141	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr7P00310_001}
TAIR	AT5G44280	8.00E-78	RING 1A

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000170	603659	623863	+

Transcript Sequence
>GWHTAAEX004981 CAAGTGAACGCGGCAGGAAGAAGCTCGCGCAGCAGCAATCGGAAATGCCCGCGCAGAAACAGCCCGCCGTCTCGCCTCCTTCGCCCTCCGCTGCTTCTGATAACTCTTCTCCATTCGCATCAACTGCAGCCGAACATCTCGAAGGGAATCCCAACGGCACCGCCGGTGACGAGGGCAACACATCTTCCCACTCCAGCCTACCTCATGACGATTCGGACGGCGAAGGTGGCAGCAGTAGCACTTCCTCGCCGGGCTCGAATGATCGGGACGAGTACATTCTTGTTAAATTATTGGACATACGCAAAGAAGTGCAGTGCCCAATTTGTTTAGGGATTATCCGAAAGACAAGAACAGTAATGGAGTGCCTGCATCGCTTTTGCAGAGAATGTATAGACAAAGCTATGCGACTTGGGAACAATGAGTGTCCCGCATGCAGGACTCACTGCGCAAGCAGACGCTCTTTGAGAGATGATCCCAATTACGATGCCCTCATCGCAGCGTTATACCCCAATATAGACAAGTACGAGGAAGAGGAACTGACTTTCCACGAAGAAGAGAAAAATCGCTATAAGAAGATACAAGCTTCCATCGCTGAGACATTCCGGCGGCAGTCCGAAGCACTCGGTAAGAGAAGGCCGTCATCCAAATCCGCCGCCTCCGCCTTCTCGAGACGAACCGGGCAAAACGGCTATTTTCGTAGCAGAGGCAAAGCCTCTGCGCCCAATGCGTCACCCTTGTTATCTGATGATGACGAGGAGTATGCCAACGGGAACGACGGCGCCCCCAAAGACTATTCCTCCGCCGAAGAAGCCTCTCCCGAAAGAAGGCCCAAGAGATGCAAGTTGATCTCCGCCGCCCGTTCTTCTCCGGCCAGAACAGCCGGCGATCTTGTATACGGCGGCGAGAACTACGACTTCGAGGGGCTGCGGGCGGGAAACAGAGAGCTAGCCTGGGGGAAAGGAGGCGCTCGAAGCCAAACTCGCCATGGAAACAACAATGGCTCCAATGGGAGATTCTTCAAGTCCGCAAGGTTGGCCAAGCTGATTGAATACCTTCGTAATCTGGACGAAAATGAGGACAAGTACGACGTGCACCTGAAACTGCACCCGTTGAATGAACAAAGCTTGCATTTGGAAAGACCGTATATTTGCTGCCCGCCAACCGCATCCATTAGACACATTCGGCAGTTCATCGCTATTCAAACATCTGTGCAAGCTGAAGGAATCGCGGTGTTTATTAAAAACCATAGAAACGGCAACCAAATAGAGAAGGCGTCCGAAGAGCTGCAGTTATTGGATGCTGAGGAATCGCTCGCCGGACTGCTGTCTTCCTTTGCCTCTAAACAAGCAGATCTAGAATTGGTGTACTGCACTAGCGTCAAAAGAGAAAGCTAGAAGATGAATATAATAATAATAATTTATTTGCAAAGCCAAGGGGTGTATATATGCAAAGCGAAGGCACACCACAAGAGTCTTGTTCATTTGAATTTTGCAGCAGCAGGTGTCGGCAAGTGTAAAATTCCTCCCTATATAGTTCATGGAAGCTTAATTTATAAGAAAAATATCATCTATTATTTTTCTAAGCAGTTGCTCTTATTGGAATTTACTTTGTATATTTGATCGAACTTTATTTTTTCTGTAATCTCCATCTATGAGGCATTGAATTGTAATTTAATATCCCAAACAAGCAAATCAAATAAATAAAAATGAGATTATAAATTGCAGGGCTCCTTTATTTCTCATTGATGTTGCTTTTCCTTCCCGGCGAGGCTGAGCCGAGGAGACTTGGAACGCTGTTTCAGCCTTCATTTGTAATATTATTGCCATGCTTCGTATCCATCAAATCAACTAATTCTTGTGAACTAATATAAGAAGGTATTACT

Network for GWHGAAEX004981

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13923.5	zf-C3HC4_2	90	130	9.30E-12

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	7.380
SRP064423	SRR2545915	Juvenile tuber	10.320
SRP108465	SRR5643513	five period of Gastrodia elata	10.210
	SRR5643514	five period of Gastrodia elata	8.850
	SRR5643515	five period of Gastrodia elata	10.390
	SRR5643524	five period of Gastrodia elata	8.410
	SRR5643525	five period of Gastrodia elata	20.300
	SRR5643528	five period of Gastrodia elata	18.080
	SRR5643658	five period of Gastrodia elata	18.640
	SRR5643659	five period of Gastrodia elata	12.090
	SRR5643660	five period of Gastrodia elata	11.990
	SRR5643661	five period of Gastrodia elata	13.130
	SRR5643662	five period of Gastrodia elata	11.330
	SRR5643663	five period of Gastrodia elata	11.590
	SRR5643664	five period of Gastrodia elata	15.660
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	13.440
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	15.140
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	13.780
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	11.740
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	12.310
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	12.620
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	10.250
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	11.560
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	11.450
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	10.760
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	13.800
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	13.800
SRP279888	Gastro	Gastrodia elata tuber	15.62
	Juven	Juvenile tuber	18.92
	Mother_Gastro	Mother tuber of Gastrodia elata	22.49
	Mother_Juven	Mother tuber of Juvenile	24.88