Detail information of GWHGAAEX004983/evm.TU.scaffold_158.25


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|476001815|gb|AGI62049.1|1.21E-82SQUAMOSA promoter-binding-like 1 [Erycina pusilla]
Swissprottr|Q9S7A9|SPL4_ARATH2.00E-44Squamosa promoter-binding-like protein 4
trEMBLtr|M9QXL3|M9QXL3_9ASPA5.00E-83SQUAMOSA promoter-binding-like 1 {ECO:0000313|EMBL:AGI62049.1}
TAIRAT1G531607.00E-44squamosa promoter binding protein-like 4

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000170637912640246-
Transcript Sequence

Network for GWHGAAEX004983

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03110.13SBP651389.20E-32
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilySBP

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003677Molecular FunctionDNA binding
GO:0005634Cellular Componentnucleus

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms2.250
SRR2545915Juvenile tuber13.380
SRP108465SRR5643513five period of Gastrodia elata8.180
SRR5643514five period of Gastrodia elata21.120
SRR5643515five period of Gastrodia elata15.640
SRR5643524five period of Gastrodia elata17.450
SRR5643525five period of Gastrodia elata41.680
SRR5643528five period of Gastrodia elata28.350
SRR5643658five period of Gastrodia elata58.270
SRR5643659five period of Gastrodia elata42.000
SRR5643660five period of Gastrodia elata41.820
SRR5643661five period of Gastrodia elata38.850
SRR5643662five period of Gastrodia elata42.330
SRR5643663five period of Gastrodia elata43.820
SRR5643664five period of Gastrodia elata38.850
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_17.450
SRR6049655Rhizomagastrodiae_C368-T10_good_18.530
SRR6049656Rhizomagastrodiae_C368-T07_good_110.680
SRR6049657Rhizomagastrodiae_C368-T07_good_13.990
SRR6049658Rhizomagastrodiae_C368-T04_good_17.630
SRR6049659Rhizomagastrodiae_C368-T04_good_16.330
SRR6049660Rhizomagastrodiae_C368-T01_good_16.340
SRR6049661Rhizomagastrodiae_C368-T04_good_14.130
SRR6049662Rhizomagastrodiae_C368-T01_good_110.060
SRR6049663Rhizomagastrodiae_C368-T01_good_17.370
SRR6049664Rhizomagastrodiae_C368-T10_good_110.500
SRR6049665Rhizomagastrodiae_C368-T10_good_110.500
SRP279888GastroGastrodia elata tuber 59.03
JuvenJuvenile tuber31.99
Mother_GastroMother tuber of Gastrodia elata 22.17
Mother_JuvenMother tuber of Juvenile 20.39