Detail information of GWHGAAEX004988/evm.TU.scaffold_158.30
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|428225275|ref|YP_007109372.1| | 6.00E-102 | phosphoadenylylsulfate reductase [Geitlerinema sp. PCC 7407] |
| KOG | KOG0189 | 2.00E-159 | Phosphoadenosine phosphosulfate reductase |
| nr | gi|743758923|ref|XP_010929469.1| | 0 | PREDICTED: 5'-adenylylsulfate reductase 1, chloroplastic-like [Elaeis guineensis] |
| Swissprot | tr|P92979|APR1_ARATH | 0 | 5'-adenylylsulfate reductase 1, chloroplastic (Precursor) |
| trEMBL | tr|M1BRD7|M1BRD7_SOLTU | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400051168} |
| TAIR | AT4G21990_1 | 2.00E-159 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000170 | 731525 | 735573 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004988
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01507.18 | PAPS_reduct | 109 | 289 | 1.90E-45 |
| PF00085.19 | Thioredoxin | 360 | 452 | 3.20E-11 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K05907 | APR | Metabolic pathways | map01100 |
| Microbial metabolism in diverse environments | map01120 | ||
| Sulfur metabolism | map00920 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0019344 | Biological Process | cysteine biosynthetic process |
| GO:0019419 | Biological Process | sulfate reduction |
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0045454 | Biological Process | cell redox homeostasis |
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0016671 | Molecular Function | oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor |
| GO:0004604 | Molecular Function | phosphoadenylyl-sulfate reductase (thioredoxin) activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 12.390 |
| SRR2545915 | Juvenile tuber | 12.300 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 15.080 |
| SRR5643514 | five period of Gastrodia elata | 25.180 | |
| SRR5643515 | five period of Gastrodia elata | 27.690 | |
| SRR5643524 | five period of Gastrodia elata | 11.680 | |
| SRR5643525 | five period of Gastrodia elata | 44.510 | |
| SRR5643528 | five period of Gastrodia elata | 183.530 | |
| SRR5643658 | five period of Gastrodia elata | 52.060 | |
| SRR5643659 | five period of Gastrodia elata | 38.310 | |
| SRR5643660 | five period of Gastrodia elata | 115.700 | |
| SRR5643661 | five period of Gastrodia elata | 36.170 | |
| SRR5643662 | five period of Gastrodia elata | 170.220 | |
| SRR5643663 | five period of Gastrodia elata | 85.250 | |
| SRR5643664 | five period of Gastrodia elata | 109.870 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 38.100 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 31.850 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 34.310 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 27.460 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 36.320 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 25.780 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 59.680 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 22.700 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 55.830 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 79.940 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 41.730 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 41.730 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 146.19 |
| Juven | Juvenile tuber | 13.26 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 204.48 | |
| Mother_Juven | Mother tuber of Juvenile | 192.18 |