Gene detail

Detail information of GWHGAAEX004992/evm.TU.scaffold_158.34

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|83643064\|ref\|YP_431499.1\|	2.00E-12	RNA-binding protein [Hahella chejuensis KCTC 2396]
nr	gi\|743793352\|ref\|XP_010923908.1\|	2.89E-88	PREDICTED: serine/arginine repetitive matrix protein 1-like isoform X2 [Elaeis guineensis]
Swissprot	tr\|Q84TH4\|SR45A_ARATH	5.00E-17	Serine/arginine-rich splicing factor SR45a
trEMBL	tr\|M0TB89\|M0TB89_MUSAM	9.00E-65	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P29440_001}
TAIR	SPAC25G10.01	2.00E-15	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000170	887719	914183	+

Transcript Sequence
>GWHTAAEX004992 ATGACACGAATTCCGTCACCGCTGCTAAGCGGTAACAAAAACTCCGGTCTTAGCTGCACTGTTTTGGGCTTTTTGGCATACAGATGTGGCGGTAACCAGACTCACACTCGCAATTGAAATACGCCTGCCTCTCTCAAAACTCATTTATCGTTTTCTTCCCTGATTTTCAGATTTATTACAGCTCGATCTCAGGATGGATAAAAATTCACCATTAGATACTTCAGAAGGGTACAATGATGAAGATGGAGTTTCTCTAGTTGACAAACTGGAATTGAATTCATTTAAAAGCAGAGAAGAATGTGGGGTGGATGGTTTAAATCCAGACAGTAAAGTGCCACCTGATGAAACACTAGTTTACACAAAAAAAGGTTATGTGAGCCTATCTATGCCCTTGTGTGAGACTAATGAGGAGGGATCACAGTATGCATTGGTGGGGCCTAATTTAGCAGATTCTTCATTGCCAGTTACAAAATTTGAAGTCATGGAGCCAAAAATGTTAGATTATCACATTGAAAGACCGGGAAGCCCTAACAGGGATAATGAGAAACAGGAGCACAAAGTTGATTTTAATACAAATGTTAAAGATTTTGCAGAAGTTGAAGATTTGAATCACCGTCATAAAATTTCTGATCAAGGAGATGCTGATCATTATAATTCAACTGATAGGGGGTGCTATGGCAAGCCTAGCGTGAAATCTTCTACACCTGATGATGCAGGAAATTGCAAATATGACCAAGACTATATTGATCCTCTGCCCGAGGGAATTGAAGTTAATGAGGAAATGGATGTTGAGAATCTGAAACAAAAACATGGTTATCAGAGGCAAATGAGAGGAGATGACTCCTCTGGGATGGCGACACCTGAAAATGGAAGAATGGTATGGGAAAACTCTAGCTTGAAATCTCCTCAGGAAACTCATAATGTCTCATTATCGCCTGAGAGAAGATTATCTATTTCTGCAGAACGGTCTCATCACAATCAATCGCCTCCCAAAGGCCATACTTCTCCTAAAAAAGGCATGCCATCCACTGCAAAGTTTGAGTCAAGCTTAGCACCTTCTCCACAATCTTCAAAAAGAAGGCATTCTCCATCCCCCGAAAAGCGTACCTTCAGTCACAAAAGAGCTTCTTCCCAAGATCGTCCATCTCCGTCTAAAAGGCTGAGATCTTCTTCTGAAAGGGCATCAAAGAGAGAAGCTCACCTCAGAGTTGATTCTCCACGGAGACACTTGTCACGATCCCCTCCCAGGCATGATTCTCCACGAAGGAGGGGAAGGTCATCATCAAAATCACCAACAAGGAGACGAGGTTCTCCAGGGCACCAAAGGGATCATCGACATTCAAGATCTCCCATTACAAGAAATCGTAGTAGAAGATCACCAAGGAGGCAGTCACCAAGGCGCAGATCTCCTCCGACCTATTCTTCTCGTCATCGCTCATCTAGAAGGCCATGGTCCCCTCCTCCTAATCGCAACACAGGTCTTGGCCGGCCTGGTAAAAATTTATTTATTGCAGGTTTTAGTTATGGGACTACTGAGAGAGATTTAGAGAGGAAGTTTTCCAAGTTTGGTCGTGTTACTGATGTTCGAATAGTTCGTGATACAAGATCAGGAGATTCGCGTGGCTTTGGATTTTTATCTTTGGAACGAGATGAGGAAGCAGATGCAGCGATACGATCTGTGGACCAGACTGAGTGGAATGGCAGGATTGTACTTGTGGAGAAATCAAAGTCCACTCGCTGAAGTTTTTTCTTTCATTTACCCAGTGTAGACTGAGCGGTTCATCATCAAATCTCACTGACTGTACTTCTTCCAAATATATATGGCATGGGTATAGAATTTTATGGGTTCACCTGCAGACTGAAACAAACGAAACTGTACCTTGTTATGAATGTTTTGGAACCCCTAATTTAGAGATGAGCAAAATACACGAATGGTTGAACCAGTCACCTGCTAGTTAAGTTCCTGTGGAAGTTCCCTCACTAGAACTTTAAAAGGTTTGATTTTTGGCATGGCTTAGGCGAACCGGAGCAATTTATGGTGAAGGAATACATTTATATGGCATGAATCTCTTGGTTCAGACAATTTTTTTCAATTTATAAATTAATACTGTTATTCGATCTGTAGAAACTTTCTTTTGTTGCTGCAGGCAATCATTTACCATGCATTTATATAGAACCACAGTCCTGAACTGTACCTTTACTCATTCCCGGCACATTGTCGTCCTGAAACAATCGATCTATAAATTGCTGCTTGACCTTTTCCTTATTTAAGTCTATACTGTGCCACAAGCTTGGATTGAGTAACAGCAGCAAAGGCTTCCCATTCCTTAAACTCGGTGAAATCCTTCGCAGGCGAAGGGTGAATTCGTGAACGGGTACATGTCGCTACCCACTAATCACATGATTCCTGTTTTAATTAATTTATTTTTTATTAGTTCAAGCATTGTTTTTAAATTTCTTGTGTGTACCTGTAGATACTAGTATTTCTTAATTCTTGTTTTTTCCTTCTGCTTTCTTTCCCTTATATTGAGTTTGAAAGTGAGTTCTAGTTAGCTATAAGCTAGGGAAACATTTACTTTGTCCTACTTGTTACTGCAGATAAGTAGGCCACACGTCATTTGATAAAGTAAAAAGCAGGATATGATATTGATGATCTCATCTCTTTGGAGTTTGGGATTGGGTTCATTAAATAATCCTCATCCTAGCTCACAAACTATACTATATACTGCGTCACTCTCTGAATCGAAAATTAATTTTATACAGTGTGGGATTTTCAAAGATTTTTGTAGCTTTTTTCTCAATTTGTTTGCTGTGTCTGGAATGGTTATGCTAACCATGATAATTTATTATCATCATAACTGACTTGTTTTTACTTTATGTTAATGGGTTTATTATTGTTACTTCATAAATCCTTCAACACAGCAACAACAACCACAAGCATTAATTCACTAGGTGGCTACATGAATCTTTTTTTTCCATTGTGCACGATCAAATAG

Network for GWHGAAEX004992

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.21	RRM_1	437	505	6.50E-16

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	32.310
SRP064423	SRR2545915	Juvenile tuber	34.750
SRP108465	SRR5643513	five period of Gastrodia elata	24.010
	SRR5643514	five period of Gastrodia elata	27.130
	SRR5643515	five period of Gastrodia elata	24.720
	SRR5643524	five period of Gastrodia elata	26.360
	SRR5643525	five period of Gastrodia elata	23.920
	SRR5643528	five period of Gastrodia elata	19.180
	SRR5643658	five period of Gastrodia elata	20.660
	SRR5643659	five period of Gastrodia elata	25.540
	SRR5643660	five period of Gastrodia elata	26.240
	SRR5643661	five period of Gastrodia elata	24.300
	SRR5643662	five period of Gastrodia elata	22.520
	SRR5643663	five period of Gastrodia elata	24.120
	SRR5643664	five period of Gastrodia elata	20.490
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	26.310
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	27.580
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	27.070
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	24.720
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	28.240
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	27.770
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	26.830
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	29.340
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	28.940
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	30.800
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	28.660
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	28.660
SRP279888	Gastro	Gastrodia elata tuber	29.08
	Juven	Juvenile tuber	26.01
	Mother_Gastro	Mother tuber of Gastrodia elata	25.54
	Mother_Juven	Mother tuber of Juvenile	26.10