Detail information of GWHGAAEX004995/evm.TU.scaffold_158.37
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|325110299|ref|YP_004271367.1| | 4.00E-97 | aldose 1-epimerase [Planctomyces brasiliensis DSM 5305] |
| KOG | KOG1604 | 5.00E-157 | Predicted mutarotase |
| nr | gi|743759117|ref|XP_010930434.1| | 1.16E-173 | PREDICTED: aldose 1-epimerase-like isoform X1 [Elaeis guineensis] |
| trEMBL | tr|B3TLS6|B3TLS6_ELAGV | 5.00E-174 | Aldose 1-epimerase {ECO:0000256|PIRNR:PIRNR005096} |
| TAIR | AT3G17940 | 5.00E-157 | Galactose mutarotase-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000170 | 926740 | 929261 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004995
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01263.19 | Aldose_epim | 30 | 350 | 6.10E-92 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0019318 | Biological Process | hexose metabolic process |
| GO:0016853 | Molecular Function | isomerase activity |
| GO:0030246 | Molecular Function | carbohydrate binding |
| GO:0003824 | Molecular Function | catalytic activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 11.650 |
| SRR2545915 | Juvenile tuber | 6.130 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 48.530 |
| SRR5643514 | five period of Gastrodia elata | 44.280 | |
| SRR5643515 | five period of Gastrodia elata | 40.900 | |
| SRR5643524 | five period of Gastrodia elata | 29.110 | |
| SRR5643525 | five period of Gastrodia elata | 109.460 | |
| SRR5643528 | five period of Gastrodia elata | 85.060 | |
| SRR5643658 | five period of Gastrodia elata | 200.620 | |
| SRR5643659 | five period of Gastrodia elata | 3.180 | |
| SRR5643660 | five period of Gastrodia elata | 4.270 | |
| SRR5643661 | five period of Gastrodia elata | 3.680 | |
| SRR5643662 | five period of Gastrodia elata | 3.220 | |
| SRR5643663 | five period of Gastrodia elata | 2.330 | |
| SRR5643664 | five period of Gastrodia elata | 2.500 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 112.410 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 110.180 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 100.670 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 48.130 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 70.940 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 66.630 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 40.790 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 49.330 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 101.690 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 97.410 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 235.870 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 235.870 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.45 |
| Juven | Juvenile tuber | 5.64 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 30.49 | |
| Mother_Juven | Mother tuber of Juvenile | 9.95 |