Detail information of GWHGAAEX004999/evm.TU.scaffold_158.42


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG10527.00E-70Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits
nrgi|743793599|ref|XP_010923968.1|3.76E-90PREDICTED: glutamate receptor 3.4-like [Elaeis guineensis]
Swissprottr|Q9C8E7|GLR33_ARATH2.00E-70Glutamate receptor 3.3 (Precursor)
trEMBLtr|M0TZH8|M0TZH8_MUSAM3.00E-89Glutamate receptor {ECO:0000256|PIRNR:PIRNR037090}
TAIRAT1G425407.00E-70glutamate receptor 3.3

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000170993959994737+
Transcript Sequence

Network for GWHGAAEX004999

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module3

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0015276Molecular Functionligand-gated ion channel activity
GO:0016020Cellular Componentmembrane

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms20.740
SRR2545915Juvenile tuber33.290
SRP108465SRR5643513five period of Gastrodia elata11.220
SRR5643514five period of Gastrodia elata17.960
SRR5643515five period of Gastrodia elata18.550
SRR5643524five period of Gastrodia elata16.580
SRR5643525five period of Gastrodia elata17.200
SRR5643528five period of Gastrodia elata28.930
SRR5643658five period of Gastrodia elata15.850
SRR5643659five period of Gastrodia elata54.690
SRR5643660five period of Gastrodia elata58.240
SRR5643661five period of Gastrodia elata58.870
SRR5643662five period of Gastrodia elata20.430
SRR5643663five period of Gastrodia elata20.340
SRR5643664five period of Gastrodia elata21.380
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_122.060
SRR6049655Rhizomagastrodiae_C368-T10_good_117.310
SRR6049656Rhizomagastrodiae_C368-T07_good_120.860
SRR6049657Rhizomagastrodiae_C368-T07_good_116.220
SRR6049658Rhizomagastrodiae_C368-T04_good_124.390
SRR6049659Rhizomagastrodiae_C368-T04_good_128.870
SRR6049660Rhizomagastrodiae_C368-T01_good_115.330
SRR6049661Rhizomagastrodiae_C368-T04_good_119.430
SRR6049662Rhizomagastrodiae_C368-T01_good_117.340
SRR6049663Rhizomagastrodiae_C368-T01_good_122.110
SRR6049664Rhizomagastrodiae_C368-T10_good_118.430
SRR6049665Rhizomagastrodiae_C368-T10_good_118.430
SRP279888GastroGastrodia elata tuber 30.77
JuvenJuvenile tuber15.98
Mother_GastroMother tuber of Gastrodia elata 40.59
Mother_JuvenMother tuber of Juvenile 15.49