Detail information of GWHGAAEX005000/evm.TU.scaffold_158.43


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|337750837|ref|YP_004644999.1|5.00E-29DEAD/DEAH box helicase [Paenibacillus mucilaginosus KNP414]
KOGKOG03273.00E-147Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases
nrgi|743813909|ref|XP_010929865.1|9.10E-166PREDICTED: DEAD-box ATP-dependent RNA helicase 58, chloroplastic isoform X1 [Elaeis guineensis]
Swissprottr|Q0JFN7|RH58_ORYSJ4.00E-156DEAD-box ATP-dependent RNA helicase 58, chloroplastic (Precursor)
trEMBLtr|M0TAU4|M0TAU4_MUSAM2.00E-164Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P27990_001}
TAIRAT5G192103.00E-147P-loop containing nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000001709959001061163-
Transcript Sequence

Network for GWHGAAEX005000

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00270.28DEAD241162.10E-09
PF00271.30Helicase_C1622809.40E-15
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005524Molecular FunctionATP binding
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms32.130
SRR2545915Juvenile tuber39.700
SRP108465SRR5643513five period of Gastrodia elata17.750
SRR5643514five period of Gastrodia elata18.360
SRR5643515five period of Gastrodia elata20.520
SRR5643524five period of Gastrodia elata18.480
SRR5643525five period of Gastrodia elata18.650
SRR5643528five period of Gastrodia elata10.850
SRR5643658five period of Gastrodia elata17.430
SRR5643659five period of Gastrodia elata22.280
SRR5643660five period of Gastrodia elata22.910
SRR5643661five period of Gastrodia elata21.390
SRR5643662five period of Gastrodia elata18.570
SRR5643663five period of Gastrodia elata20.950
SRR5643664five period of Gastrodia elata22.210
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_125.400
SRR6049655Rhizomagastrodiae_C368-T10_good_117.770
SRR6049656Rhizomagastrodiae_C368-T07_good_131.220
SRR6049657Rhizomagastrodiae_C368-T07_good_124.280
SRR6049658Rhizomagastrodiae_C368-T04_good_141.260
SRR6049659Rhizomagastrodiae_C368-T04_good_147.470
SRR6049660Rhizomagastrodiae_C368-T01_good_134.100
SRR6049661Rhizomagastrodiae_C368-T04_good_143.850
SRR6049662Rhizomagastrodiae_C368-T01_good_129.790
SRR6049663Rhizomagastrodiae_C368-T01_good_138.250
SRR6049664Rhizomagastrodiae_C368-T10_good_128.460
SRR6049665Rhizomagastrodiae_C368-T10_good_128.460
SRP279888GastroGastrodia elata tuber 35.09
JuvenJuvenile tuber15.02
Mother_GastroMother tuber of Gastrodia elata 23.03
Mother_JuvenMother tuber of Juvenile 15.51