Detail information of GWHGAAEX005004/evm.TU.scaffold_158.47
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0810 | 7.00E-112 | SNARE protein Syntaxin 1 and related proteins |
| nr | gi|357122594|ref|XP_003563000.1| | 3.36E-134 | PREDICTED: syntaxin-132-like [Brachypodium distachyon] |
| Swissprot | tr|Q9SRV7|SY131_ARATH | 2.00E-112 | Putative syntaxin-131 |
| trEMBL | tr|I1GTU6|I1GTU6_BRADI | 1.00E-134 | Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI1G25880.1} |
| TAIR | AT3G03800 | 7.00E-112 | syntaxin of plants 131 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000170 | 1107214 | 1109929 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005004
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00804.24 | Syntaxin | 40 | 244 | 6.80E-68 |
| PF05739.18 | SNARE | 246 | 298 | 1.90E-13 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K08486 | STX1B_2_3 | SNARE interactions in vesicular transport | map04130 |
| Synaptic vesicle cycle | map04721 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016192 | Biological Process | vesicle-mediated transport |
| GO:0006886 | Biological Process | intracellular protein transport |
| GO:0005484 | Molecular Function | SNAP receptor activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.200 |
| SRR2545915 | Juvenile tuber | 0.250 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 8.570 |
| SRR5643514 | five period of Gastrodia elata | 11.360 | |
| SRR5643515 | five period of Gastrodia elata | 6.980 | |
| SRR5643524 | five period of Gastrodia elata | 9.990 | |
| SRR5643525 | five period of Gastrodia elata | 0.170 | |
| SRR5643528 | five period of Gastrodia elata | 0.000 | |
| SRR5643658 | five period of Gastrodia elata | 0.040 | |
| SRR5643659 | five period of Gastrodia elata | 0.140 | |
| SRR5643660 | five period of Gastrodia elata | 0.200 | |
| SRR5643661 | five period of Gastrodia elata | 0.000 | |
| SRR5643662 | five period of Gastrodia elata | 0.050 | |
| SRR5643663 | five period of Gastrodia elata | 0.120 | |
| SRR5643664 | five period of Gastrodia elata | 0.000 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 28.510 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 48.540 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 27.220 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 11.040 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 34.570 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 23.900 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 10.500 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 21.190 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 35.810 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 32.670 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 78.500 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 78.500 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.13 |
| Juven | Juvenile tuber | 0.10 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 5.18 | |
| Mother_Juven | Mother tuber of Juvenile | 1.33 |