Gene detail

Detail information of GWHGAAEX005006/evm.TU.scaffold_158.48

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2031	Tyrosyl-DNA phosphodiesterase
nr	gi\|743759236\|ref\|XP_010931036.1\|	PREDICTED: tyrosyl-DNA phosphodiesterase 1 isoform X1 [Elaeis guineensis]
trEMBL	tr\|E0CVK9\|E0CVK9_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI23170.3}
TAIR	AT5G15170	tyrosyl-DNA phosphodiesterase-related

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000170	1116338	1239121	-

Transcript Sequence
>GWHTAAEX005006 CTGATGTTCCCGGTAGGAGTCATTAGTCGTTAAAGTTCGAAGCACTGTATCCGCACTCAAGGTTTTCATAGAAAATCCACAGACTGTGTCCGCACTTGAGGTTTTCATAGAAAACCCACAGATGACCTCCGCTGTGGCAAGGCTATAATTGCGTTTCATCCGCACGCAAGGAGCTTGGCTTATTTCAAGAGTCGTCGCACTGCCATGGCCAATTCTCGGGTGGCAATTGGTTCGCTGCTTCCTCTTCAAAACAACCTCACAGTTGATCATTCGGCTGTAAGCATTCCAGTTTTTGAAGGTGTCAATTTTGTAGGGCGGGAGAACATGACAATGCTTGACAAGAGAGTTAGCCGAAAACACATTAGACTTCTTGGCTCAAGTGATGGAGTTGCTGAACTTGTTGTTGAAGGTCCTAACCCAGTCATTTTAACGTCCGGGAGCCAAAAAAGGAAATTGGTCTCTCAAGAAAAAATTTTCATTGATGATGGTGACGTTCTTGAATTAATTCCGGGTTATCATTTATTCAAATATGTAAAAGCTAGAGGTGAACTCTTATCCTGTCCAGGAAGAGATATTGTCTTTTCAGTTGAAGTACTAAAACAAACAAATAAGGAGGCCATAGTTTATGATAGCAGTCATCAGATTATCCAAGATGAAGCTTTAGCAAGAACATTGCAGAATTTGGAGGACAACAGGTTGCTTAAAGTTACCCCTTCAGTTGTGTCTAGATATGGCTCATCTCTTGCTACATCAAATGCTGTTAGGGTTTTATCAAATTTCGAGGCAATGAACCAATTTGATATTTCCAAGGAGTGCTTATCTCTTTTATTTCGGCTAATGCGAGTACATGGTCTTCCTGAATGGACAAATAAATCTTCAGTTGCTATCCATGATGTTATAGAGGGAAACATTCTTGTTGCTATTCTTTCAAACTACATGGTGGACATCGATTGGTTGAAGAATGCTTGTTCAAAGCTGTGGGAGATTCCTCACGTGCTTATTGTCCATGGTGAAAGTGGCAGCCGGGCTGATTATTTGCAGATGCAAAAGCCATCAAATTGGGTTCTGCACAAACCTCCGCTTCCTATATCTTACGGAACACACCACTCCAAGGCCATGCTTCTTGTTTATGAAAAAGGAGTGCGCATCATTATACATTCTGCAAATTTAATCCATGCTGATTGGAACAACAAAACTCAGGGATTATGGATGCAAGATTTCCCTTTAAAAAATGCCAACAACTTGTCTGAGACTTCTTCGTTTGAGAGGGACTTAATTGACTATCTCAGCACTCTTAAGTGGCCTGGATTAAGGGCAAATTTACCTTTATTTGGTGATGTAAACTTAACTGCATCATTCTTTAAGAAGTTTGACTACAGCGATGCCATGGTACGGTTGATTGCTTCTGTGCCTGGTTATCATGGTGGCACAAATCTTAAAAAATGGGGACACATGAAAATGAGAGCAGTTCTTGAAGAGTGTGAATTTGACAAACAATTTTCTAAATCCCCTCTTGTTTATCAGTTTTCATCTCTTGGTTCCTTGGATGAAAGGTGGTTGTCAGAGTTTGGAGTGTCAATGTCATCAGGAGTTTCATATGATAAATCACCACTTGGCTCAGGGAAGCCTGCAATCATTTGGCCAACTGTAGAAGATGTTAGATGCTCTCTGGAGGGTTATGCAGCCGGTAGTTCCATTCCAAGCCCTCAAAAGAATGTAGAGAAAGACTTTATGAAGAATTACTGGTCAAAATGGATGGCAAAGCACTCAGGTCGATGTCAGGCAATGCCTCACATAAAATCCTACACCCGACATAACGGACAAAATCTTGCATGGTTTCTTCTAACTTCAGCAAATTTAAGCAAAGCAGCATGGGGTGCTCTGCAAAAGAATGACTCTCAACTTATGATTCGTTCTTATGAGTTAGGAGTTTTGTTTTTGCCATCCGTTATAAAGGGCAATCTTTCTCAATTTTCATGCACTGGGAATGGTGATGTGAAAAAGGTAGCTGCTGGGAACATCAAAACAAAGTTGGTGACACTATGTTGGAATGGCAAGACGAATTCTTCATCTGATGTCATCATCCGCCTTCCTGTTCCATATCAACTTCCGCCCCTGCCTTACACTTCTGAAGATGTGCCCTGGTCATGGGACCGGCAGTATATTAAGAAGGACATAAACGGTCAAGTTTGGCCATGAATGCTTTAGCTTCTGGAGTTGCAGTTTACAGGTTTTTAGGTCAAGAAGATTTAAGAAAGAAGCAACTCAAGAGAATTTTTAAATTTTGCTTAATTAGCATCTTAACGTGGAATTTTGTATTTATTTTTAACAAATTAAAAGTTGATGGTTATGATATTTTGATGACAATTTTATTGATTTATTTGTGGCATTAGCTGTGACTAATCCACTTATTTTATTTTAATTGTGAAATTTATGTATTTAATAGACTGTTGTGAAATGGTGGCATGAGCTTATCTATTTATGCAA

Network for GWHGAAEX005006

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06087.11	Tyr-DNA_phospho	209	640	6.70E-101

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006281	Biological Process	DNA repair
GO:0005515	Molecular Function	protein binding
GO:0008081	Molecular Function	phosphoric diester hydrolase activity
GO:0005634	Cellular Component	nucleus

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	6.980
SRP064423	SRR2545915	Juvenile tuber	11.350
SRP108465	SRR5643513	five period of Gastrodia elata	4.960
	SRR5643514	five period of Gastrodia elata	5.690
	SRR5643515	five period of Gastrodia elata	5.010
	SRR5643524	five period of Gastrodia elata	5.180
	SRR5643525	five period of Gastrodia elata	3.220
	SRR5643528	five period of Gastrodia elata	3.020
	SRR5643658	five period of Gastrodia elata	3.910
	SRR5643659	five period of Gastrodia elata	6.790
	SRR5643660	five period of Gastrodia elata	6.720
	SRR5643661	five period of Gastrodia elata	4.840
	SRR5643662	five period of Gastrodia elata	6.630
	SRR5643663	five period of Gastrodia elata	6.850
	SRR5643664	five period of Gastrodia elata	5.500
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	6.150
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	7.350
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	6.830
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	5.530
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	5.370
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	7.090
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	6.790
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	6.630
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	6.500
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	6.860
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	7.320
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	7.320
SRP279888	Gastro	Gastrodia elata tuber	7.30
	Juven	Juvenile tuber	7.68
	Mother_Gastro	Mother tuber of Gastrodia elata	5.85
	Mother_Juven	Mother tuber of Juvenile	7.78