Detail information of GWHGAAEX005008/evm.TU.scaffold_158.51
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|389860489|ref|YP_006362728.1| | 5.00E-08 | trNA-splicing endonuclease subunit alpha [Thermogladius cellulolyticus 1633] |
| KOG | KOG4685 | 2.00E-75 | tRNA splicing endonuclease SEN2 |
| nr | gi|672122459|ref|XP_008784561.1| | 1.14E-101 | PREDICTED: probable tRNA-splicing endonuclease subunit Sen2 [Phoenix dactylifera] |
| Swissprot | tr|Q5Z6B1|SEN2_ORYSJ | 2.00E-76 | Probable tRNA-splicing endonuclease subunit Sen2 |
| trEMBL | tr|F6GTX7|F6GTX7_VITVI | 5.00E-91 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB43641.1} |
| TAIR | AT3G45590 | 2.00E-75 | splicing endonuclease 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000170 | 1321981 | 1322742 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005008
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02778.13 | tRNA_int_endo_N | 40 | 111 | 1.20E-05 |
| PF01974.16 | tRNA_int_endo | 124 | 211 | 1.20E-17 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006388 | Biological Process | tRNA splicing, via endonucleolytic cleavage and ligation |
| GO:0000213 | Molecular Function | tRNA-intron endonuclease activity |
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0004518 | Molecular Function | nuclease activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 16.560 |
| SRR2545915 | Juvenile tuber | 17.980 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 9.470 |
| SRR5643514 | five period of Gastrodia elata | 6.440 | |
| SRR5643515 | five period of Gastrodia elata | 10.030 | |
| SRR5643524 | five period of Gastrodia elata | 8.960 | |
| SRR5643525 | five period of Gastrodia elata | 10.660 | |
| SRR5643528 | five period of Gastrodia elata | 11.840 | |
| SRR5643658 | five period of Gastrodia elata | 9.120 | |
| SRR5643659 | five period of Gastrodia elata | 11.180 | |
| SRR5643660 | five period of Gastrodia elata | 11.670 | |
| SRR5643661 | five period of Gastrodia elata | 8.560 | |
| SRR5643662 | five period of Gastrodia elata | 11.980 | |
| SRR5643663 | five period of Gastrodia elata | 9.720 | |
| SRR5643664 | five period of Gastrodia elata | 7.830 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 14.900 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 10.480 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 14.600 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 14.900 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 17.160 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 19.800 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 14.210 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 16.470 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 15.060 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 14.000 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 14.600 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 14.600 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 17.97 |
| Juven | Juvenile tuber | 9.02 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 13.17 | |
| Mother_Juven | Mother tuber of Juvenile | 8.10 |