Detail information of GWHGAAEX005012/evm.TU.scaffold_158.56


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG17564.00E-82Histone 2A
nrgi|728827578|gb|KHG07253.1|8.27E-81hypothetical protein F383_34286 [Gossypium arboreum]
Swissprottr|O81826|H2A3_ARATH1.00E-82Probable histone H2A.3
trEMBLtr|Q0WRA6|Q0WRA6_ARATH1.00E-80Histone H2A {ECO:0000256|RuleBase:RU003556}
TAIRAT4G272304.00E-82histone H2A 2

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000017013520441353116-
Transcript Sequence

Network for GWHGAAEX005012

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00125.23Histone461241.40E-14
PF16211.4Histone_H2A_C1271604.70E-17
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K11251H2A Necroptosis map04217

Gene Ontology

GO term OntologyName
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
GO:0005634Cellular Componentnucleus
GO:0000786Cellular Componentnucleosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms35.270
SRR2545915Juvenile tuber61.930
SRP108465SRR5643513five period of Gastrodia elata144.520
SRR5643514five period of Gastrodia elata198.560
SRR5643515five period of Gastrodia elata130.220
SRR5643524five period of Gastrodia elata147.880
SRR5643525five period of Gastrodia elata99.790
SRR5643528five period of Gastrodia elata82.070
SRR5643658five period of Gastrodia elata71.220
SRR5643659five period of Gastrodia elata73.690
SRR5643660five period of Gastrodia elata69.810
SRR5643661five period of Gastrodia elata89.100
SRR5643662five period of Gastrodia elata67.840
SRR5643663five period of Gastrodia elata72.550
SRR5643664five period of Gastrodia elata63.410
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1110.330
SRR6049655Rhizomagastrodiae_C368-T10_good_1105.570
SRR6049656Rhizomagastrodiae_C368-T07_good_1170.190
SRR6049657Rhizomagastrodiae_C368-T07_good_1104.570
SRR6049658Rhizomagastrodiae_C368-T04_good_181.150
SRR6049659Rhizomagastrodiae_C368-T04_good_149.680
SRR6049660Rhizomagastrodiae_C368-T01_good_1103.930
SRR6049661Rhizomagastrodiae_C368-T04_good_1119.010
SRR6049662Rhizomagastrodiae_C368-T01_good_1219.600
SRR6049663Rhizomagastrodiae_C368-T01_good_1132.960
SRR6049664Rhizomagastrodiae_C368-T10_good_1234.870
SRR6049665Rhizomagastrodiae_C368-T10_good_1234.870
SRP279888GastroGastrodia elata tuber 43.64
JuvenJuvenile tuber50.91
Mother_GastroMother tuber of Gastrodia elata 105.26
Mother_JuvenMother tuber of Juvenile 36.69