Detail information of GWHGAAEX005015/evm.TU.scaffold_158.60
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|430744433|ref|YP_007203562.1| | 1.00E-24 | WD40 repeat-containing protein [Singulisphaera acidiphila DSM 18658] |
| nr | gi|695042266|ref|XP_009408779.1| | 0 | PREDICTED: receptor-like serine/threonine-protein kinase SD1-8 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9SXB4|Y1130_ARATH | 0 | G-type lectin S-receptor-like serine/threonine-protein kinase At1g11300 (Precursor) |
| trEMBL | tr|A0A067G412|A0A067G412_CITSI | 0 | Serine/threonine-protein kinase {ECO:0000256|PIRNR:PIRNR000641} |
| TAIR | AT4G21380 | 0 | receptor kinase 3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000170 | 1404213 | 1409056 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005015
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01453.23 | B_lectin | 68 | 180 | 5.50E-25 |
| PF00954.19 | S_locus_glycop | 211 | 323 | 4.70E-20 |
| PF08276.10 | PAN_2 | 345 | 411 | 2.30E-17 |
| PF07714.16 | Pkinase_Tyr | 515 | 785 | 1.50E-49 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_DLSV |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0048544 | Biological Process | recognition of pollen |
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0004674 | Molecular Function | protein serine/threonine kinase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 13.410 |
| SRR2545915 | Juvenile tuber | 8.150 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 6.770 |
| SRR5643514 | five period of Gastrodia elata | 3.530 | |
| SRR5643515 | five period of Gastrodia elata | 9.180 | |
| SRR5643524 | five period of Gastrodia elata | 6.240 | |
| SRR5643525 | five period of Gastrodia elata | 43.150 | |
| SRR5643528 | five period of Gastrodia elata | 46.870 | |
| SRR5643658 | five period of Gastrodia elata | 38.940 | |
| SRR5643659 | five period of Gastrodia elata | 7.310 | |
| SRR5643660 | five period of Gastrodia elata | 3.400 | |
| SRR5643661 | five period of Gastrodia elata | 8.320 | |
| SRR5643662 | five period of Gastrodia elata | 7.400 | |
| SRR5643663 | five period of Gastrodia elata | 5.220 | |
| SRR5643664 | five period of Gastrodia elata | 6.250 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 5.240 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 4.120 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.300 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 4.220 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 4.640 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 4.160 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 7.720 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 8.250 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 6.680 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 7.070 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.220 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.220 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 5.88 |
| Juven | Juvenile tuber | 7.34 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 89.61 | |
| Mother_Juven | Mother tuber of Juvenile | 67.68 |