Detail information of GWHGAAEX005018/evm.TU.scaffold_158.64


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|159041361|ref|YP_001540613.1|3.00E-07putative mRNA 3-end processing factor [Caldivirga maquilingensis IC-167]
KOGKOG13615.00E-136Predicted hydrolase involved in interstrand cross-link repair
nrgi|743826373|ref|XP_010933274.1|5.54E-158PREDICTED: 5' exonuclease Apollo [Elaeis guineensis]
Swissprottr|Q38961|SNM1_ARATH1.00E-39DNA cross-link repair protein SNM1
trEMBLtr|A0A061E4J0|A0A061E4J0_THECC5.00E-149DNA repair metallo-beta-lactamase family protein, putative isoform 1 {ECO:0000313|EMBL:EOX99251.1}
TAIRAT1G274105.00E-136DNA repair metallo-beta-lactamase family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000017014663501490872+
Transcript Sequence

Network for GWHGAAEX005018

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF07522.13DRMBL2223153.00E-10
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms51.340
SRR2545915Juvenile tuber20.520
SRP108465SRR5643513five period of Gastrodia elata15.300
SRR5643514five period of Gastrodia elata16.820
SRR5643515five period of Gastrodia elata16.640
SRR5643524five period of Gastrodia elata13.990
SRR5643525five period of Gastrodia elata25.870
SRR5643528five period of Gastrodia elata18.560
SRR5643658five period of Gastrodia elata24.120
SRR5643659five period of Gastrodia elata21.580
SRR5643660five period of Gastrodia elata25.090
SRR5643661five period of Gastrodia elata22.940
SRR5643662five period of Gastrodia elata24.600
SRR5643663five period of Gastrodia elata28.730
SRR5643664five period of Gastrodia elata28.020
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_123.480
SRR6049655Rhizomagastrodiae_C368-T10_good_121.690
SRR6049656Rhizomagastrodiae_C368-T07_good_117.110
SRR6049657Rhizomagastrodiae_C368-T07_good_131.100
SRR6049658Rhizomagastrodiae_C368-T04_good_130.370
SRR6049659Rhizomagastrodiae_C368-T04_good_134.790
SRR6049660Rhizomagastrodiae_C368-T01_good_123.390
SRR6049661Rhizomagastrodiae_C368-T04_good_123.490
SRR6049662Rhizomagastrodiae_C368-T01_good_114.860
SRR6049663Rhizomagastrodiae_C368-T01_good_114.100
SRR6049664Rhizomagastrodiae_C368-T10_good_113.700
SRR6049665Rhizomagastrodiae_C368-T10_good_113.700
SRP279888GastroGastrodia elata tuber 19.55
JuvenJuvenile tuber31.47
Mother_GastroMother tuber of Gastrodia elata 8.72
Mother_JuvenMother tuber of Juvenile 18.33