Detail information of GWHGAAEX005019/evm.TU.scaffold_158.65


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|307152491|ref|YP_003887875.1|4.00E-66WD40 repeat-containing protein [Cyanothece sp. PCC 7822]
KOGKOG03060WD40-repeat-containing subunit of the 18S rRNA processing complex
nrgi|672190823|ref|XP_008775349.1|0PREDICTED: WD repeat-containing protein 3 [Phoenix dactylifera]
Swissprottr|Q3Y8L7|DAW1_CHLRE1.00E-23Dynein assembly factor with WDR repeat domains 1
trEMBLtr|M0RNN2|M0RNN2_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P02020_001}
TAIRAT3G215400transducin family protein / WD-40 repeat family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000017014940311515794+
Transcript Sequence

Network for GWHGAAEX005019

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.31WD4061924.00E-05
PF00400.31WD40971343.60E-07
PF00400.31WD401431761.10E-05
PF00400.31WD401812171.30E-05
PF00400.31WD403864200.013
PF00400.31WD405686019.80E-06
PF00400.31WD406066440.15
PF00400.31WD406496866.90E-06
PF04003.11Utp127888886.50E-19
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
K14556DIP2, UTP12, WDR3 Ribosome biogenesis in eukaryotes map03008

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms13.810
SRR2545915Juvenile tuber14.210
SRP108465SRR5643513five period of Gastrodia elata13.470
SRR5643514five period of Gastrodia elata13.240
SRR5643515five period of Gastrodia elata12.100
SRR5643524five period of Gastrodia elata11.330
SRR5643525five period of Gastrodia elata8.860
SRR5643528five period of Gastrodia elata7.010
SRR5643658five period of Gastrodia elata5.310
SRR5643659five period of Gastrodia elata17.930
SRR5643660five period of Gastrodia elata19.640
SRR5643661five period of Gastrodia elata14.850
SRR5643662five period of Gastrodia elata16.760
SRR5643663five period of Gastrodia elata15.810
SRR5643664five period of Gastrodia elata16.050
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_121.210
SRR6049655Rhizomagastrodiae_C368-T10_good_121.610
SRR6049656Rhizomagastrodiae_C368-T07_good_119.920
SRR6049657Rhizomagastrodiae_C368-T07_good_119.700
SRR6049658Rhizomagastrodiae_C368-T04_good_119.120
SRR6049659Rhizomagastrodiae_C368-T04_good_119.060
SRR6049660Rhizomagastrodiae_C368-T01_good_121.440
SRR6049661Rhizomagastrodiae_C368-T04_good_119.190
SRR6049662Rhizomagastrodiae_C368-T01_good_125.410
SRR6049663Rhizomagastrodiae_C368-T01_good_120.880
SRR6049664Rhizomagastrodiae_C368-T10_good_120.570
SRR6049665Rhizomagastrodiae_C368-T10_good_120.570
SRP279888GastroGastrodia elata tuber 15.79
JuvenJuvenile tuber24.06
Mother_GastroMother tuber of Gastrodia elata 8.11
Mother_JuvenMother tuber of Juvenile 11.93