Detail information of GWHGAAEX005020/evm.TU.scaffold_158.66


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|20093691|ref|NP_613538.1|2.00E-4850S ribosomal protein L10 [Methanopyrus kandleri AV19]
KOGKOG08577.00E-14460s ribosomal protein L10
nrgi|661892875|emb|CDP04033.1|6.49E-154unnamed protein product [Coffea canephora]
Swissprottr|Q9SPB3|RL10_VITRI3.00E-15260S ribosomal protein L10
trEMBLtr|A0A068U8U1|A0A068U8U1_COFCA2.00E-154Coffea canephora
TAIRAT1G269107.00E-144Ribosomal protein L16p/L10e family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000017015168231521760+
Transcript Sequence

Network for GWHGAAEX005020

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00252.17Ribosomal_L16121662.00E-42
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02866RP-L10e, RPL10 Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0005840Cellular Componentribosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms361.330
SRR2545915Juvenile tuber401.450
SRP108465SRR5643513five period of Gastrodia elata510.620
SRR5643514five period of Gastrodia elata475.100
SRR5643515five period of Gastrodia elata454.580
SRR5643524five period of Gastrodia elata453.500
SRR5643525five period of Gastrodia elata329.020
SRR5643528five period of Gastrodia elata460.770
SRR5643658five period of Gastrodia elata349.470
SRR5643659five period of Gastrodia elata551.610
SRR5643660five period of Gastrodia elata527.910
SRR5643661five period of Gastrodia elata574.830
SRR5643662five period of Gastrodia elata463.990
SRR5643663five period of Gastrodia elata428.840
SRR5643664five period of Gastrodia elata474.620
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1441.290
SRR6049655Rhizomagastrodiae_C368-T10_good_1367.450
SRR6049656Rhizomagastrodiae_C368-T07_good_1501.730
SRR6049657Rhizomagastrodiae_C368-T07_good_1412.210
SRR6049658Rhizomagastrodiae_C368-T04_good_1427.670
SRR6049659Rhizomagastrodiae_C368-T04_good_1395.200
SRR6049660Rhizomagastrodiae_C368-T01_good_1468.710
SRR6049661Rhizomagastrodiae_C368-T04_good_1434.160
SRR6049662Rhizomagastrodiae_C368-T01_good_1578.110
SRR6049663Rhizomagastrodiae_C368-T01_good_1552.220
SRR6049664Rhizomagastrodiae_C368-T10_good_1666.190
SRR6049665Rhizomagastrodiae_C368-T10_good_1666.190
SRP279888GastroGastrodia elata tuber 475.59
JuvenJuvenile tuber528.91
Mother_GastroMother tuber of Gastrodia elata 256.88
Mother_JuvenMother tuber of Juvenile 368.79