Gene detail

Detail information of GWHGAAEX005021/evm.TU.scaffold_158.67

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|743822502\|ref\|XP_010932293.1\|	PREDICTED: uncharacterized protein LOC105052997 [Elaeis guineensis]
trEMBL	tr\|B9SLR5\|B9SLR5_RICCO	Putative uncharacterized protein {ECO:0000313\|EMBL:EEF35421.1}
TAIR	AT3G01720	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000170	1522525	1571514	+

Transcript Sequence
>GWHTAAEX005021 TTCGGGAGCGTCGCCTTCGTCCTTAGCGAGAGCGAGAATCGGGAGCGCCGTCTTCGTCCTCAAGCGAGAATCGGATCGAAGCACGGTTCAGTGGGGTCACGATAATCTTCCTTCATAATGTGATATTTAAAAATCAAGCCAGAAATTACTTTGGTGATAATGATGATTGTGGTTTCACTGATGCTGCTGTTTATATTAGTCTTAACAACATCCTTTTCCAGTGGAATTGAGGTTTTAGGGCAGAAAGCACCATGGAGGATCCACACATTGTTCTCAGTGGAGTGCCATGATTACTTTGATTGGCAGACAGTTGGTTTAGTTCACAGTTATCACAAGGCACAACAACCGGGGCCAATCACTAGACTTCTTAGTTGCACTGAGGAGGAGTATCAGCATTACAAGGGGATGGGGCTTGCCCCGACCTTCATGGTCCCATCCATGAGTCGCCACCCAAAAACTGGAGATTGGTACCCTGCTATTAATAAACCAGCTGGCATTGTTCATTGGCTTAAACATAGCGAAGATGCAGAGGATGTTGATTGGGTTGTGATCTTGGATGCAGATATGATCATTCGGGGTCCAATTATACCTTGGGAACTTGGGGCAGAGAAGGGAAAGGCTGTTGCGGCATATTATGGGTACTTAATTGGATGCGATAACATTTTAGCACGATTGCATACAAAGCACCCTGAATATTGTGACAAGGTTGGTGGGCTTTTGGCCATGCATATTGATGATTTGAGAGCCTTGGCTCCTATGTGGCTCTCAAAGACTGAGGAAGTTAGAGCAGATCGGAACCATTGGGGGACTAATATAACTGGTGACATTTATGGCCATGGTTGGATCAGTGAGATGTACGGTTACTCTTTTGGTGCTGCTGAGGTAGGACTTCGGCACAAGATAAGTGATGATTTGATGATATACCCAGGTTATGTTCCAAGACTTGGTGTTGAGCCCATCCTCTTGCACTACGGCTTGCCTTTCAAAGTTGGGAACTGGTCTTTTAGCAAGTTAGACCATCATGAGGATGGACTTGTCTATGAATGCAACCGTCTTTTTCTGCCTCCTCCATATCCCAAAGAGATTCAAATGATAGAATCTAATCCACAGGAGAGGCGGGGTTTATTTCTAAGTATAGAATGTATAAACACACTAAATGAAGGACTCTTATCACACCATGCATCCATGGGTTGCCCTGCACCCCAATGGTCTAAGTATTTAAATTTTTTGAAAAGCAAGACGTTTTCAGAGCTTACTAAGCCAATATATTTAAGCTTTCCTAAAATGAAAAATTTTCTTGAGCAAAAGATGGCATCCAATGAATTGAGAAGGTCAAATCCAAAAATGCATACCCTTTTTTCAACCGAATGTTCACCATATTTTGATTGGCAAACTGTAGGTCTTATGCATAGTTTCCATTTGAGCAATCATCCAGGAAATATTACTCGGCTTTTAAGTTGCACTGATGAGGACTTGCAGAATTATCAAGGTCATGATTTGGCTCCTACTCATTACGTTCCGTCTATGAGTCGGCATCCACTTACTGGAGATTGGTACCCTGCGATCAACAAGCCTGCGGCTGTTCTCCATTGGCTTAATCATATTGAAACTGATGCAGAATTCATTGTTATCCTTGATGCTGATATGATACTTAGAGGTCCCATCACACCTTGGGAATATGGTGCTGAACGTGGCCATCCTGTTTCAACACCCTATGAATATCTTATTGGCTGTGATAATATTCTGGCAAAACTTCATACTCGTAATCCTGGAGCTTGTGATAAGGTTGGAGGTGTCATAATCATGCATATAGAAGACTTGCGGAATTTTGCACTATTATGGCTTCATAAAACAGAAGAAGTTCGAGCTGATAAATCTCATTATGCTAGAAACTTCACTGGAGATATATATTCATCAGGCTGGATTAGTGAAATGTATGGATACTCGTTTGGGGCAGCAGAGCTAAATTTGAAACACGTTGTAAGAAGAGACATACTCATTTATCCGGGTTACATTCCCGAACCTGGTATCAATTATAGGGTCTTTCATTATGGGCTCAGATTTACTGTTGGCAACTGGAGTTTTGACAAATCAGAATGGAGAACCACTGACATGGTGAACAAATGTTGGGCCAAGTTCCCTGAACCGCCACATCCTTCTAATCTCACCACCGTGGATGAAAAAGCCTTTCAAAGGGATCTCCTTAGCATTGAATGTGCGCGAACTCTGAACAGTGCTCTTCAGTTGCACCATGAACGAAGAAAGTGTCCTCTAGATACTAGCATGAATTCACTGCTCGTTTTGTTGGGTGAGAAAGTTGATGAAAAGAAGGATGTGAGGAAGTTAATCAGTTCAGTCACTTCATCTAATATTTCATTTTTACATGGATCAAAAATTCTGGATAGATCTTTGAGGATCTGGATGATTGGCATCTGGGCTCTCTCTGTGATCGGTTTCCTGGCGTTTATTTCAATGGCCTTTTCTAGTAGAAAAATAGAGATTTCAAAGGCAAAAATGACTAGGAAAAAAAATTCTTATAGTGGAGTTAGGCACTATGATACTGAGAGCAGTTCAGAGGCATAAAATTTACAAAAGAATGAAACAAGCACTTGGATATATATTTAGATAAAATTGGAGCGGAGGACAAACGATAAAAATCGTCAATTTGCCTGCCTGCTGTAATGATCTGATTATAATCTTGGAAGCTGTCTTATTTTTTCCTACTTTCTGAGGTGTACCTTTTCCATTATTAGTTTTGTGAGCTGCTATAGGTTTTATATACAAACCATCTGAATTTATGAACATACATTTTAGTCTAAAGTTGCTTTGCACTAACAACTGTCATATATGGTTGTAGTCTATCAAACATAGATATATTTGAGTACATATTTTATCGAGTTTGCCAACATGTAGATGCGGGGGGAGTAAATGACTTGTTCTTATTTTCTTATTTGTTTGTTTTGCTGCAAAATAAATGCATGTATTTCTTAAGATATAATTTCTTAGTGTGGAATGATTGTATAACATCATCAAACTTTAATCCCACTTAGGTGGGATTGGCTACATGAATCCTTTGTTTTGATTG

Network for GWHGAAEX005021

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT96

KEGG pathway

KO	Enzyme	pathway	mapID
K20781	SGT1	Other types of O-glycan biosynthesis	map00514

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	49.080
SRP064423	SRR2545915	Juvenile tuber	56.650
SRP108465	SRR5643513	five period of Gastrodia elata	51.360
	SRR5643514	five period of Gastrodia elata	44.340
	SRR5643515	five period of Gastrodia elata	48.660
	SRR5643524	five period of Gastrodia elata	52.770
	SRR5643525	five period of Gastrodia elata	31.840
	SRR5643528	five period of Gastrodia elata	47.570
	SRR5643658	five period of Gastrodia elata	28.990
	SRR5643659	five period of Gastrodia elata	41.150
	SRR5643660	five period of Gastrodia elata	38.320
	SRR5643661	five period of Gastrodia elata	33.500
	SRR5643662	five period of Gastrodia elata	27.150
	SRR5643663	five period of Gastrodia elata	34.100
	SRR5643664	five period of Gastrodia elata	22.020
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	32.570
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	28.480
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	33.860
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	35.100
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	28.610
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	32.540
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	30.310
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	29.500
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	37.990
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	32.950
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	38.050
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	38.050
SRP279888	Gastro	Gastrodia elata tuber	21.22
	Juven	Juvenile tuber	36.44
	Mother_Gastro	Mother tuber of Gastrodia elata	42.96
	Mother_Juven	Mother tuber of Juvenile	33.31